Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq70 100 3e-15 seq106 95.1 1e-13 seq258 89.7 6e-12 seq53 89.7 6e-12 >seq70 Length=105670 Score = 100 bits (110), Expect = 3e-15 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||| || || ||||| | ||| || || || |||||||||| | |||||||| Sbjct 4351 TGATCGACATAACGAGCCGTATTGTTGAAAACACGTAGCATGGGCAACAATCCGTTGGAG 4410 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | ||||||||||| || | ||| | || || || | ||||| | ||||| Sbjct 4411 TAACCGTTGGTGCCGGCAATGTATGATCCACTAGCACGAATGTTGTGAATGTTTAAGCCA 4470 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||| || | ||||||||| | || || ||||||||| || ||||| || ||| Sbjct 4471 ATACCGCCTGCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCG 4530 Query 1630246 ATCGAGTCGGCCTTCATG 1630263 ||||| || | |||||| Sbjct 4531 ATCGAATCTTCTTTCATG 4548 >seq106 Length=79482 Score = 95.1 bits (104), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || |||| ||||| ||| ||||| || | | |||||||| | || || || Sbjct 37412 ACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAAACCACGTTT 37471 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||||||||||| ||| || || ||||| ||||| || ||||| || |||| Sbjct 37472 CTTGAGCCAAAAGATGGAAGCA-AAGGAACCAGAGAAGAAGATACCTTCGACAGCAGCAA 37530 Query 869298 AGCCGATGAGCCGCTCGGCAAAGG 869321 || | | || ||||| ||||||| Sbjct 37531 AGGCAACAAGGCGCTCAGCAAAGG 37554 >seq258 Length=22759 Score = 89.7 bits (98), Expect = 6e-12 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||| || || || ||||| || || || || | || Sbjct 4926 GCTTGGCGAGTTCACCAGGAAGGATGAGACGAACAGCGGTTTGAATTTCACGAGAAGAGA 4867 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| || |||| | ||| || || | || || || | | Sbjct 4866 TGGTGGAACGCTTGTTGTAGGCAGCCAACTTGGAGGCTTCAGTAGCAATACGTTCAAAGA 4807 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || ||||||| || ||||| | |||||||||||| || ||||||| Sbjct 4806 TATCGTTGACGAAGGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCAGTATCGGGGT 4747 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| | |||||||||||| | || || || Sbjct 4746 GGACTTGCTTCAAGACCTTGTAGATGTAAGAGGAATA 4710 >seq53 Length=125223 Score = 89.7 bits (98), Expect = 6e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1630076 AGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGG 1630135 |||| || ||||| |||||||| |||||||| || | || ||| ||||| ||||| | Sbjct 91536 AGCGAGCGGTGTCATTAAAGACTCGGAGCATTGGAATGATGCCATTGGAGGTACCGTTTG 91477 Query 1630136 TGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGG 1630195 | || || | || | ||| | | | || | ||| || || |||| ||| | ||||| | Sbjct 91476 TTCCTGCGATATAAGAGCCAGAGCCACGAATCTTTTGAGCAGCAACGCCAACACCGCCAG 91417 Query 1630196 CCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGG 1630255 | ||||||||||| | || || ||| || || |||||||| ||||| ||| Sbjct 91416 CAGACTTGGAGATACGAGCACAAGTGGTGATAGTATCATAGATGCCTTCGATACTGTCCT 91357 Query 1630256 CCTTCATGTCCACGAGAAAGCA 1630277 | ||||| | || || ||||| Sbjct 91356 CTTTCATTTGAACAAGGAAGCA 91335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107093243777520