Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq109 156 3e-33 seq91 102 6e-17 seq11 102 6e-17 seq165 86.0 5e-12 >seq109 Length=78937 Score = 156 bits (172), Expect = 3e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||| |||||||||||||| || | ||| ||| Sbjct 18305 ACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACC 18364 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| |||||| | || | | ||| ||||| || |||||||| || || Sbjct 18365 ATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTT 18424 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||||| ||| | || | |||||||||| ||| ||||| | ||| || Sbjct 18425 GTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAAT 18484 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | || || ||||| || ||||| Sbjct 18485 TGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 18520 >seq91 Length=92626 Score = 102 bits (112), Expect = 6e-17 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || ||||| ||||||||||| ||||| | ||| ||| ||| Sbjct 69973 ACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAA-GGTACGAC 70031 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| || || | || | | ||| ||||| || || ||||| || | Sbjct 70032 CGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCT 70091 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 | ||||| | ||||| |||||| | || | |||||||| Sbjct 70092 TATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCAGA 70131 >seq11 Length=236632 Score = 102 bits (112), Expect = 6e-17 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || ||||||||||| ||||| ||||| | ||| || ||| Sbjct 171 ACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACTCAA-AGTACGAC 113 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| ||||| || ||||| || | || | | ||| ||||| || || ||||| || | Sbjct 112 CATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCT 53 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 ||||||| | ||||| |||||| |||| | | | ||||| Sbjct 52 TGTCTTGGATCTTTTGCTTGACATTTTCGATACTATCAGA 13 >seq165 Length=49949 Score = 86.0 bits (94), Expect = 5e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || || || || || || ||||| ||||| ||||| || || | ||| ||| ||| Sbjct 37839 ACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAA-GGTACGAC 37897 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| || ||| | || | | ||| || || || |||||||| || | Sbjct 37898 CGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCT 37957 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAA 29730 ||||||| | ||||| ||||| | || | ||||| ||| Sbjct 37958 TGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGGAA 37998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216570878960