Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq109 185 2e-41 seq91 122 2e-22 seq165 120 6e-22 seq11 113 9e-20 seq93 95.1 2e-14 >seq109 Length=78937 Score = 185 bits (204), Expect = 2e-41 Identities = 185/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||| || || || ||||| || Sbjct 18292 TACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGC 18351 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| ||||| |||||||| ||||||||||| || | ||||||||| |||| Sbjct 18352 TTAGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAG 18411 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||||||| ||||||||| || || || ||| || ||| | Sbjct 18412 GAATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGA 18471 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTT 82820 |||| ||||| || ||||| || || | ||||| ||||| || ||||| | ||||||| Sbjct 18472 CTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGA-TATATTT 18529 Score = 98.7 bits (108), Expect = 2e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 82615 TAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAG 82674 ||||||| | || || ||||| ||| ||| | ||| | ||| |||||||| |||| Sbjct 18097 TAGATTCACTTTGGATGTTATATTCATTCAGAGTATGACCATTTTCGAGTTGTTTGCCAG 18156 Query 82675 CAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT- 82733 ||||||||| | |||||||| ||| || || ||||||| |||||||| ||||||||| Sbjct 18157 CAAAGATTAAACGTTGTTGATTTGGCGGAATGTCTTCCTTTTCTTGAAT-TTTGCTTTTC 18215 Query 82734 ACATTTTCAATCGTATCA 82751 ||| | |||| |||||| Sbjct 18216 ACAATATCAACGGTATCA 18233 >seq91 Length=92626 Score = 122 bits (134), Expect = 2e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 69960 TACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAC 70019 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| |||||||| || || || || || | ||||||||| |||| Sbjct 70020 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAG 70079 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 | || |||||||||||||| |||||| || ||||| ||||| || ||| Sbjct 70080 GGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCA 70129 >seq165 Length=49949 Score = 120 bits (132), Expect = 6e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||||||| ||||||||||| || || || || || || Sbjct 37826 TACCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGC 37885 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| |||||||| || |||||||| || | |||||| || |||| Sbjct 37886 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAG 37945 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 | || |||||||| |||||||||||| || || || ||||| || || Sbjct 37946 GAATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTC 37994 >seq11 Length=236632 Score = 113 bits (124), Expect = 9e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| |||||||||||||| || || || |||||| | | | | ||| Sbjct 171 ACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACTCAAAGTACGACC 112 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || || || || || | ||||||||| ||||| || |||||||| Sbjct 111 ATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTT 52 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 ||||| |||||| || |||||||| || ||||| Sbjct 51 GTCTTGGATCTTTTGCTTGACATTTTCGATACTATCA 15 >seq93 Length=91516 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 || ||||| || |||||||| ||||| |||||| || || ||||| || ||||| | Sbjct 91516 TCAGGAGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTTTCGATACTATCAGAA 91457 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | ||| ||||||||||| || |||||||| || | |||||||| || || |||||| || Sbjct 91456 GATTCGACTTCCAAAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTTT 91397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981820155389840