Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq70 154 3e-32 seq106 123 6e-23 seq102 91.5 3e-13 seq57 87.8 4e-12 >seq70 Length=105670 Score = 154 bits (170), Expect = 3e-32 Identities = 462/706 (65%), Gaps = 19/706 (3%) Strand=Plus/Minus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 ||||||||||||||||| || ||| |||| | || | | ||| |||| ||| Sbjct 4778 TTTGGTTTCAAAACTCTCGAGCGTTCTTACCTTCTCAAGATTGACGGCAAGATTGCCGAA 4719 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 |||||||| || || | | ||||||||||| ||||| |||||| |||||| | || Sbjct 4718 CGTCCTCAGCATTTGATCATGCGTGTTGCGATCGGTATCCATGGAACCGATATTGATGCA 4659 Query 110427 GTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCT 110480 | |||||| || |||||| || ||| | | | || |||| |||| Sbjct 4658 GCTATTGAGACATACAACTTGATGTCCGAA------AGATACTTTACACACGCTAGTCCT 4605 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || |||||||| ||||| || | | || || |||||||||| | || || Sbjct 4604 ACTCTATTTAATGCAGGCACACCTCGTCCCCAGATGTCTTCTTGCTTCTTGCTCACCATG 4545 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || || ||||| || |||||||| ||||| | || ||| ||||| || || || Sbjct 4544 AAAGAAGATTCGATCGAAGGTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCCAAG 4485 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | || || ||||| | || |||| | ||||| | | ||| || | || || Sbjct 4484 ACAGCAGGCGGTATTGGCTTAAACATTCACAACATTCGTGCTAGTGGATCATACATTGCC 4425 Query 110661 A-CAGCGAAGGGTGCTTCAACTGGACTTGTT-CCAATGTTAAGAGTCTTCAACGACACTG 110718 || | | || | || |||| ||| ||||| || ||| || | || |||||| | || | Sbjct 4424 GGCACCAACGGTTACTCCAAC-GGA-TTGTTGCCCATGCTACGTGTTTTCAACAATACGG 4367 Query 110719 CAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| ||||||||||||| | | ||| |||| || || || | |||| Sbjct 4366 CTCGTTATGTCGATCAAGGTGGTAATAAGCGTCCGGGCGCATTCGCAATGTACTTGGAAC 4307 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 |||||||| |||| || ||| || ||||| | || ||||| || || ||| Sbjct 4306 CTTGGCATGCAGACATTTTTACCTTTTTAGACTTGCGAAAAAACTTTGGCAAAGACGAAA 4247 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 || || |||||| | || ||||| | |||||| | ||| | |||||| | ||||| Sbjct 4246 TCAGGGCTCGTGATCTGTTCTATGCTCTCTGGATTCCTGATCTTTTCATGCAGCGTGTCA 4187 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 ||| ||| |||||||| | ||||| || ||||||| || ||| | | Sbjct 4186 GAGACGGTGGTGATTGGTCTCTGTTTTGTCCCAATGAGGCTCCTGGATTACATGAAATCT 4127 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 || | ||||||| | || || |||||||| ||| ||||| Sbjct 4126 GGGGTGACGAGTTTGTTGCTCTCTATGAAAAATACGAACGTGAAGG 4081 >seq106 Length=79482 Score = 123 bits (136), Expect = 6e-23 Identities = 360/549 (66%), Gaps = 18/549 (3%) Strand=Plus/Minus Query 131468 TATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATT 131527 ||||| ||| ||| || |||| ||||| | |||||| |||||| ||| ||| ||| || Sbjct 37933 TATAAAAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTGAGCAAGGATCTT 37874 Query 131528 GATGATTGGGAAAA---ATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGT-TCTTG- 131582 ||||||||||||| | | ||| |||||| | || | | || || ||||| Sbjct 37873 CATGATTGGGAAAACAAAATGACCGAAAATGAAC--GTTTCTTTATCTCTCGTGTCTTGG 37816 Query 131583 CATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAG 131642 | ||||| || || ||||||||||||| |||||| | ||| || || | | | Sbjct 37815 CCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTTGTGATG 37756 Query 131643 AAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTC 131702 || | | |||||||||| | || ||||| |||||| | ||||| |||| Sbjct 37755 AAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAAACATTC 37696 Query 131703 ATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATA 131762 | || | || | |||||||| | | | | ||| || | | || ||| | | Sbjct 37695 ACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAACCAAGAGAAAGAAA 37636 Query 131763 AATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTA 131822 | ||| |||| | | | | ||| || || | || || || ||||| | | Sbjct 37635 TGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAGAGAAAGGCTGATTGGGCCTTCA 37576 Query 131823 AATGGATT----CAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGT 131878 | |||||| ||| | | |||| ||| || | ||||| || |||||| | Sbjct 37575 AGTGGATTTCCTCAA-ACGGTTCC------TTTGCTGAGCGCCTTGTTGCCTTTGCTGCT 37523 Query 131879 GTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGA 131938 || |||||||| ||||| || ||| | || | | ||||||||||| ||||| ||||| Sbjct 37522 GTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCTCAAGAAACGTGGT 37463 Query 131939 TTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACT 131998 |||||||| || | |||| |||| |||| |||| | ||||||| | |||||| Sbjct 37462 TTGATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGTCTTCATACT 37403 Query 131999 GAATTTGCT 132007 || |||||| Sbjct 37402 GACTTTGCT 37394 >seq102 Length=81779 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGCAAGTGTAATGAAG 72228 ||||| |||||||| || || ||| || ||||||||| ||| || |||||| ||| Sbjct 37200 ACTTTACCAAACACGACATGCTTGCCATCTAAATGTGGGGTAGGAACAGTTGTAATAAAG 37141 Query 72229 AATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAA 72288 ||||| || ||||| |||| || | ||| ||||| || | ||| || || Sbjct 37140 AATTGAGATCCATTTGTTCCAGGGCCAGCGTTTGCCATGGACAACAAGAATGGTTTGTCG 37081 Query 72289 TGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTT 72348 ||||||| | || || ||||||||||| |||| ||||| ||| || ||| | Sbjct 37080 TGCTTTAGTTCAAAGTTTTCATCTTCAAACTTTTCACCATAAATAGATTCACCGCCCGTA 37021 Query 72349 CCATCA-AAGTTCACAATATCACCTCCTTGAACCATAAAATT 72389 || | | || | || |||||| ||||||||||||||||| Sbjct 37020 CCGTTACCAGCT-GTAAAATCACCACCTTGAACCATAAAATT 36980 >seq57 Length=122951 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 148318 ACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATATCCAATT 148377 |||| || |||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 48891 ACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTATCCAATT 48950 Query 148378 TCGCCAATAGGGC 148390 | |||||| |||| Sbjct 48951 TGGCCAATCGGGC 48963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186804284618160