Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq109 102 2e-16 seq70 102 2e-16 seq11 98.7 2e-15 seq165 95.1 3e-14 >seq109 Length=78937 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || ||||| || || ||||| ||||| ||| ||||||| Sbjct 18517 CAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTCGAATCTTCTGAC 18458 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| ||||| |||||||||||||| || ||||| ||| || || ||| Sbjct 18457 ACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAA 18398 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || || | |||||||| | || | ||| || ||| | Sbjct 18397 CGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAACATT 18338 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || |||||||||||| Sbjct 18337 CAAAAGGAATCTACTCTTCAC 18317 >seq70 Length=105670 Score = 102 bits (112), Expect = 2e-16 Identities = 215/315 (68%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 || ||||| |||| ||||| || | || ||||| |||||| |||||||| | | Sbjct 3985 GCATCCTTATAGAGTATGAATGGATTGCCTGTCTCCGTTTGAGCTTCCAAAATGGCATAC 4044 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | ||| || || | || ||| ||||||||||| ||||||| | |||||| Sbjct 4045 CACAGCTTTTGAGCCTTGATCGTTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAG 4104 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || | | || || | || | ||||| | | || ||||| || || |||||||| Sbjct 4105 AGAGCAACAAACTCGTCACCCCAGATTTCATGTAATCCAGGAGCCTCATTGGGACAAAAC 4164 Query 173287 AGACTCCAATTTCCATCGGTCTC-GACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 173345 ||| ||||| ||| | ||||| ||| | || |||||| || || | | |||| | || Sbjct 4165 AGAGACCAATCACCA-CCGTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGAGAGC 4223 Query 173346 GTAGAACAATTGCCTTGCCTTTTTGAGGTCGTCTCCTCC-AGGTTTCTTCGCA--TCCAC 173402 ||||||| | | ||| ||| |||||| || | |||| |||||| || | Sbjct 4224 ATAGAACAGATCACGAGCC---CTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAGTCTAA 4280 Query 173403 AAAAGTAAAGATGTC 173417 ||| ||||| ||||| Sbjct 4281 AAAGGTAAAAATGTC 4295 >seq11 Length=236632 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 206237 TCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||||| || ||||||||||| ||||| || ||||| || || || ||| | | Sbjct 23 TCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCTCCTGATCAACAACGTC 82 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || |||||||| |||||| | |||||||| | |||||| ||||||||| |||| | Sbjct 83 TCATTTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTTTGAGTGATTACAACATCCAAA 142 Query 206357 AAGAGTCTACTCTTCAC 206373 |||| |||||||||||| Sbjct 143 AAGAATCTACTCTTCAC 159 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||||||||| ||||| |||| || || ||| |||||| | |||||||| ||||| Sbjct 159 GTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACTCAAAGTACGACCATCTTCGAGCTG 100 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| |||||||| || || ||||||||| Sbjct 99 CTTGCCGGCGAAAATGAGACGTTGTTGA 72 >seq165 Length=49949 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||| ||||| | || || ||||||||||||||||| || ||||| ||| || Sbjct 38000 AGTTCCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCT 37941 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| ||| | |||||||| ||||| || || | ||||| || | || ||| ||| Sbjct 37940 GACCAACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGAC 37881 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| |||| || || |||||||| ||| | ||| | | ||||| Sbjct 37880 TACAACATCCAAAAGGAATCTACTCTCCACTTAGTTCTCCGTCTTCG 37834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181812320435760