Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq109 116 4e-21 seq70 105 6e-18 seq165 102 8e-17 seq91 98.7 9e-16 seq11 89.7 5e-13 >seq109 Length=78937 Score = 116 bits (128), Expect = 4e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||||||||| |||||||| | |||||| ||||||||| |||||||| | | Sbjct 18327 GATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCGAGTTGTTTACCAGCA 18386 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| |||||||| ||||| || ||||| || || ||| |||||||| | Sbjct 18387 AAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTTACA 18446 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | | || ||||| | || | || || ||||| || || || Sbjct 18447 TTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTG 18506 Query 132110 ATGAAAATCTGCATGACTTATT 132131 | || || ||||||| |||| Sbjct 18507 ACAAAGATTTGCATGATATATT 18528 >seq70 Length=105670 Score = 105 bits (116), Expect = 6e-18 Identities = 347/528 (66%), Gaps = 11/528 (2%) Strand=Plus/Plus Query 147886 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCC 147942 ||||| || ||||| ||||| | ||| | || | || || |||||| || || Sbjct 4291 ATGTCTGCATGCCAAGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCACCT 4350 Query 147943 TGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCA 148002 || ||||||| || || | ||||| || || || | |||||| || ||| | | | Sbjct 4351 TGATCGACATAACGAGCCGTATTGTTGAAAACACGTAGCATGGGCAACAATCCGTTGG-A 4409 Query 148003 GTG-CCGTTGGTGGAATTGATCT-TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 || ||||||||| || | || | || | || || | | ||| | ||| | || Sbjct 4410 GTAACCGTTGGTGCCGGCAATGTATGAT-CCACTAGCACGAATGTTGTGAATGTTTAAGC 4468 Query 148061 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119 |||| ||||| || || ||| || || ||| || | ||| ||||| || Sbjct 4469 CAATACCGCCTGCTGT-CTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCT 4527 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 ||||| || | ||| | | ||||| || || ||| |||| || ||| | || Sbjct 4528 TCGATCGAATCTTCTTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGTGTG 4587 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || || || || ||||| ||||| ||||| || ||| ||||| | || Sbjct 4588 CCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAAGTATCTTTCGGACATCAAGTTGTAT 4647 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299 ||||||||||| | || || ||| || || || || | ||| || ||||||| || Sbjct 4648 GTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGATCGCAACACGCATGATCAAA 4707 Query 148300 TGCTGTGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGT 148358 ||||| || |||||||||| |||| || ||||||||||| || | ||||| || Sbjct 4708 TGCTGAGGACGTTCGGCAATCTTG-CCGTCAATCTTGAGAAGGTAAGAACGCTCGAGAGT 4766 Query 148359 TTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 |||| |||||||| | ||||| | ||||| | || || |||||| Sbjct 4767 TTTGAAACCAAAGAAGTTGTACTTGAAATCACGGTCATAGATGATGGC 4814 >seq165 Length=49949 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||||||||||| |||||| |||||||| |||||||||| | Sbjct 37861 GATTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCA 37920 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTT 132045 |||| ||||| ||||| || ||||| || ||||| || || ||| ||||| || Sbjct 37921 AAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 37976 >seq91 Length=92626 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | || || |||||||||||||| || |||| |||||| ||||| Sbjct 69979 AACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTC 70038 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| |||||||||| | || ||||| |||||||| ||||| || ||||| ||||| Sbjct 70039 GAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATC 70095 >seq11 Length=236632 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| |||||||| || |||| ||||| |||||||||||| || |||| Sbjct 149 GATTCTTTTTGGATGTTGTAATCACTCAAAGTACGACCATCTTCGAGCTGCTTGCCGGCG 90 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| |||||||| ||||| || ||||| || || || ||||| || | Sbjct 89 AAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACA 30 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTC 132078 | ||| | | |||| | | ||| ||||| Sbjct 29 TTTTCGATACTATCAGAGGACTCGACTTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607863721600