Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq109 118 9e-22 seq11 102 7e-17 seq91 93.3 4e-14 seq53 91.5 1e-13 >seq109 Length=78937 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || ||| | || ||||| | || || | ||||||||| | Sbjct 18521 CATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTCGAATCTTC 18462 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||||||| | ||||||||||| ||| || || || ||||| || || ||||| Sbjct 18461 TGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCA 18402 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | ||||| | | || |||||||||||||||| | | | | ||||| || || Sbjct 18401 ACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAA 18342 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||| || |||| || || Sbjct 18341 CATTCAAAAGGAATCTACTCTTCACTTGGT 18312 >seq11 Length=236632 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 25220 GAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGT 25279 |||||||| || |||| |||||| | || || ||||| || || || || ||| Sbjct 1 GAAGTCGAGTCCTCTGATAGTATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGT 60 Query 25280 ATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT 25339 || || || ||||| ||| | ||||||| || |||||| || |||||||||| | | | | Sbjct 61 ATCCCTCCTGATCAACAACGTCTCATTTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACT 120 Query 25340 GTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || |||||||| || ||||||||||| || |||| || || Sbjct 121 TTGAGTGATTACAACATCCAAAAAGAATCTACTCTTCACTTGGT 164 >seq91 Length=92626 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25250 GTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTAC 25309 || || ||||| || ||||| || ||||| || || ||||| ||| | ||||||| | Sbjct 70113 GTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCAACAACGTCTCATTTTC 70054 Query 25310 GGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCC 25369 | ||| |||||||||||||| | | | | | || |||||||| |||||||| ||||| Sbjct 70053 GCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAACATTCAAAAGGAATCT 69994 Query 25370 ACCATTCATTTAGT 25383 ||| |||| || || Sbjct 69993 ACCCTTCACTTGGT 69980 >seq53 Length=125223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 293/447 (66%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 136650 GATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTTAAACCCTTCTC 136709 ||||| || | |||||| ||| ||||| |||||||||||| ||||||| ||||||| Sbjct 93140 GATTGCATCAACTGCAGGTCTAGATCTCAAATAGTACATGCCAGTCTTTAGTCCCTTCTT 93081 Query 136710 CCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACGAAAAGATT 136769 ||||| |||| || ||||| | ||| | | || | || ||||| || | ||| Sbjct 93080 CCAGGCATAAAAGTGCATAGAAGTCAATTTGCCAAAGTTTGGTTCGGCAGTAAATAAATT 93021 Query 136770 TAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAGTACTT- 136828 | ||||| ||||| || | | ||| | || ||||||||| |||||| || || Sbjct 93020 CATAGATTGAGATTGATCAATAAAGGCTCCTCTATCAGCGGCCATG-TCAATAATAGTTC 92962 Query 136829 TTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGGAATTTCATCGA 136888 |||| ||| ||||| |||| || | || | |||| || ||||| || | Sbjct 92961 TTTGTGAAATCTCCCACACGGTCTTGTATAGTTTTTTGAGATCATCAGGAATGCCAGGAA 92902 Query 136889 TATTCTG--TAC-AGATCCGTTGTTTTTGATGATTTTCATCATGAGATCAGTCGAGTATA 136945 || ||| ||| | || | | || || ||| | ||| |||| || ||| Sbjct 92901 TACGCTGGATACTACCGCCATGAGCGATCATCATGTTCTTGATGTTATCATTC---CATA 92845 Query 136946 CGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGATATTCGCCCGAT- 137004 | | || ||||| | || | | |||||| || |||| ||| |||| || | Sbjct 92844 AATCGAGTTCAATGAGATCATTCAATAAATGCTGGTTGACTATTTGGAATTCACCGCTTT 92785 Query 137005 -AGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTTGTTACCCAA 137063 | ||| ||||| || | ||| |||||| | |||||||| ||||||| |||||||| Sbjct 92784 GAACACGACGCGTA--TAAATATTGCTAGTGTAAGGCTCGAAGCATTCGTTATTACCCAA 92727 Query 137064 AATCTGTGCAGTCGTCGCTGTCGGCAT 137090 || || ||| | || || ||||| Sbjct 92726 TATTTGACTAGTGCTAGCAGTAGGCAT 92700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091284339200