Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq70 131 2e-24 seq106 104 3e-16 seq258 100 4e-15 seq97 89.7 7e-12 >seq70 Length=105670 Score = 131 bits (144), Expect = 2e-24 Identities = 183/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || || |||||||| ||||| || || || |||| || || ||||| || | | Sbjct 4607 CCTACTCTATTTAATGCAGGCACACCTCGTCCCCAGATGTCTTCTTGCTTCTTGCTCACC 4548 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||| | ||||||||||| || |||||||| |||||||| || || | |||||| Sbjct 4547 ATGAAAGAAGATTCGATCGAAGGTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCC 4488 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| | || ||||| || || || | ||||| | || || || | ||| | Sbjct 4487 AAGACAGCAGGCGGTATTGGCTTAAACATTCACAACATTCGTGCTAGTGGATCATACATT 4428 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || ||||||||||| | |||||||| | |||||||||| || ||||| ||| | ||| Sbjct 4427 GCCGGCACCAACGGTTACTCCAACGGATTGTTGCCCATGCTACGTGTTTTCAACAATACG 4368 Query 260165 GCGCGCTACGTCGACCA 260181 || || || ||||| || Sbjct 4367 GCTCGTTATGTCGATCA 4351 >seq106 Length=79482 Score = 104 bits (114), Expect = 3e-16 Identities = 226/328 (69%), Gaps = 14/328 (4%) Strand=Plus/Minus Query 1455989 TGTTT-TACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047 ||||| || || || || ||| || |||||||| ||| | ||||| ||| || || Sbjct 37732 TGTTTCTATGGCTTTCAAATCATGATTGAAAACATTCACGCAGAAACTTACAGTCTTTTG 37673 Query 1456048 ATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACG 1456107 || ||||| || |||| || ||||| || |||||| || || ||||| Sbjct 37672 ATTGACACTTATATCAAAGATAACCAAGAGAAAGAAATGCTCTTTTCTGCTATTGACACT 37613 Query 1456108 GTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT--CAACAAGGAGGGCC 1456165 | || | | | || |||||| || ||||| | |||||||| | ||| | || Sbjct 37612 ATCCCTTGTATCAAGAGAAAGGCTGATTGGGCCTTCAAGTGGATTTCCTCAA--ACGGT- 37556 Query 1456166 TCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGG 1456224 || |||||| ||||| || || | |||||| || ||||| || ||||| ||||| || Sbjct 37555 TC----CTTTGCTGAGCGCCTTGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGG 37500 Query 1456225 CAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTT 1456283 || ||| ||||||||||||||||||| || || | ||||||||| || || Sbjct 37499 TTCCTT-TGCTTCCATCTTTTGGCTCAAGAAACGTGGTTTGATGCCCGGT-TTGACATTC 37442 Query 1456284 AGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||||| ||||| ||| |||| || |||| Sbjct 37441 AGCAATGAATTGATCTGTCGTGATGAAG 37414 >seq258 Length=22759 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| | ||||| || |||||| || | | ||| ||||||||| || Sbjct 4722 ATCTACAAGGTCTTGAAGCAAGTCCACCCCGATACTGGT-----ATC-TCCAACAAGGCC 4775 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||| ||||||| || |||||||| || | || || || | || || ||| Sbjct 4776 ATGTCCATCTTGAACTCCTTCGTCAACGATATCTTTGAACGTATTGCTACTGAAGCCTCC 4835 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||| || ||||||||| ||| ||| | || || || || ||||| || Sbjct 4836 AAGTTGGCTGCCTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATTCAAACCGCTGTT 4895 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | || ||||| |||| |||||||||||| || || |||| Sbjct 4896 CGTCTCATCCTTCCTGGTGAACTCGCCAAGCACGCCGTCTCTGAAGGTACCA 4947 >seq97 Length=86107 Score = 89.7 bits (98), Expect = 7e-12 Identities = 168/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||| | ||||| || ||||| || ||| || | Sbjct 19332 TACTCTTCTTATATCTACAAGGTCTTGAAGCAAGTTCACCCTGATAC---TGG--TAT-C 19279 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| ||||||| |||||||| || || | || || || | | Sbjct 19278 TCCAACAAGGCCATGTCCATCTTGAACTCTTTTGTCAATGATATCTTTGAACGTATTGCC 19219 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || || ||| |||| | ||||||||| ||| ||| | || || || Sbjct 19218 ACTGAAGCCTCCAAATTGGCTGCTTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATT 19159 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || || || || || || || | | || ||||| |||| |||||| ||||| || || Sbjct 19158 CAAACTGCTGTTCGTCTCATTCTTCCTGGTGAACTCGCCAAGCACGCTGTCTCTGAAGGT 19099 Query 725139 ACCA 725142 |||| Sbjct 19098 ACCA 19095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177757186970720