Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq70 172 5e-38 seq109 120 3e-22 seq91 109 5e-19 seq11 91.5 1e-13 seq165 84.2 2e-11 >seq70 Length=105670 Score = 172 bits (190), Expect = 5e-38 Identities = 426/639 (67%), Gaps = 13/639 (2%) Strand=Plus/Plus Query 131613 TGGGACACATTAGCGACCA--CACG-CCGT-TCTGTTCAACTCGCTTCATAAACAAATCC 131668 ||||||| | || ||||| ||| |||| |||| || |||| ||| || | ||| Sbjct 4154 TGGGACAAAACAGAGACCAATCACCACCGTCTCTG----ACACGCTGCATGAAAAGATCA 4209 Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728 || | ||| | || || |||||||| | ||| | | || ||| | || | ||||| Sbjct 4210 GGAATCCAGAGAGCATAGAACAGATCACGAGCCCTGATTTCGTCTTTGCCAAAGTTTTTT 4269 Query 131729 ttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCG 131788 ||| | ||||||| |||||||| |||||||| |||||||| |||| ||| | |||| Sbjct 4270 CGCAAGTCTAAAAAGGTAAAAATGTCTGCATGCCAAGGTTCCAAGTACATTGCGAATGCG 4329 Query 131789 CCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAAC 131845 || |||||| || ||||||| |||| |||| || | |||||| | || || | | Sbjct 4330 CCCGGACGCTTATTACCACCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGTAGC 4389 Query 131846 ATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTG 131905 |||||| ||| ||||||| || || ||||||| |||||| ||| | || | Sbjct 4390 ATGGGCAACAATCCGTTGGAGTAACCGTTGGTGCCGGCAATGTATGATCCACTAGCACGA 4449 Query 131906 ATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGT 131964 || ||||||| ||| | |||||||| || || || || |||||| | || || | | Sbjct 4450 ATGTTGTGAATGTTTAAGCCAATACCGCCTGCTGTCTTG-GAGATTTGAGCACAGATTTT 4508 Query 131965 TAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGA 132024 || || | |||||||||||| | || | ||| || || |||||||| || Sbjct 4509 GAGCGTCTCATAGATACCTTCGATCGAATCTTCTTTCATGGTGAGCAAGAAGCAAGAAGA 4568 Query 132025 CAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTT 132084 || ||| | || |||||| || ||| | || || || ||||||||||| | | Sbjct 4569 CATCTGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAAGTATCT 4628 Query 132085 TTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATCGCCCAGATGTATGGTCAA 132144 || || ||| | || | | ||||| | || |||||| ||| || | Sbjct 4629 TTCGGACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGAT 4688 Query 132145 TGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAA 132204 || || |||||| || || ||| || ||||| | |||||||| || |||| | Sbjct 4689 CGCAACACGCATGATCAAATGCTGAGGACGTTCGGCAATCTTGCCGTCAATCTTGAGAAG 4748 Query 132205 ATAACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTA 132243 ||| || | ||||||||||||||| | ||||| Sbjct 4749 GTAAGAACGCTCGAGAGTTTTGAAACCAAAGAAGTTGTA 4787 >seq109 Length=78937 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| || |||||||| | | | || | |||||| Sbjct 18312 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCG 18371 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| || | |||||||| |||||||| || || | ||| || || || Sbjct 18372 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 18431 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | ||| | | || | |||||| | | ||| ||||||| ||| || | || Sbjct 18432 ATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTCTTT 18491 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||||||||| Sbjct 18492 CCAGTAAGTGTCTTGACAAAGATTTGCAT 18520 >seq91 Length=92626 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| ||||| || |||| | | || |||||||| Sbjct 69980 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCG 70039 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||||||| |||||||||| |||||||| || || | ||| || ||||| | Sbjct 70040 AGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGG 70099 Query 27159 ATCTT 27163 ||||| Sbjct 70100 ATCTT 70104 >seq11 Length=236632 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| || || || | || | ||||| || | ||||| |||||||| || ||||| Sbjct 189 TTATTGACCGCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTA 130 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 || |||| | || | ||||||||||| || |||||| |||||||||| |||||||| Sbjct 129 ATCACTCAAAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATC 70 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || || | ||| || || || |||||| Sbjct 69 AGGAGGGATACCTTCCTTGTCTTGGATCTT 40 >seq165 Length=49949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| || ||||||||||||| | | || |||||||||| ||||||||| Sbjct 37858 GTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCGAGTTGTTTACCG 37917 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 || | || ||||| ||||| || || || | ||| || || || Sbjct 37918 GCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTC 37961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931499822720