Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq70 298 6e-76 seq106 149 7e-31 seq251 91.5 2e-13 >seq70 Length=105670 Score = 298 bits (330), Expect = 6e-76 Identities = 902/1377 (66%), Gaps = 22/1377 (2%) Strand=Plus/Minus Query 104232 TGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACAT 104291 || ||||||| || || |||||||| ||||| || |||||| | | | ||||||| Sbjct 4705 TGATCATGCGTGTTGCGATCGGTATCCATGGAACCGATATTGATGCAGCTATTGAGACAT 4646 Query 104292 ACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTA 104351 || || ||||||| || | || | ||||| | || || || || ||||| || | Sbjct 4645 ACAACTTGATGTCCGAAAGATACTTTACACACGCTAGTCCTACTCTATTTAATGCAGGCA 4586 Query 104352 CACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACG 104411 |||| | ||||| ||||| ||||||| | || ||| || || || || ||| | | Sbjct 4585 CACCTCGTCCCCAGATGTCTTCTTGCTTCTTGCTCACCATGAAAGAAGATTCGATCGAAG 4526 Query 104412 GTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGA 104471 ||||||||| || || | ||||| |||||||| ||| || || |||||||| Sbjct 4525 GTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCCAAGACAGCAGGCGGTATTGGCT 4466 Query 104472 TGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAG 104531 | |||| || | | | || | | ||| ||| || || || ||| | || Sbjct 4465 TAAACATTCACAACATTCGTGCTAGTGGATCATACATTGCCGGCACCAACGGTTACTCCA 4406 Query 104532 ATGGTATTATT-CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCT 104590 | || ||| || || ||||| || || || ||| || || || ||||| |||||| | Sbjct 4405 ACGG-ATTGTTGCCCATGCTACGTGTTTTCAACAATACGGCTCGTTATGTCGATCAAGGT 4347 Query 104591 GG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 104644 || ||||| ||| | ||||| | || | || || ||||| || || || Sbjct 4346 GGTAATAAGCGTCC---GGGCGCATTCGCAATGTACTTGGAACCTTGGCATGCAGACATT 4290 Query 104645 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTC 104704 | || | || ||||| ||| || | || || || || ||||| Sbjct 4289 TTTACCTTTTTAGACTTGCGAAAAAACTTTGGCAAAGACGAAATCAGGGCTCGTGATCTG 4230 Query 104705 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 104764 |||| |||||||||||||| ||||| |||||| || | || || |||| ||||| Sbjct 4229 TTCTATGCTCTCTGGATTCCTGATCTTTTCATGCAGCGTGTCAGAGACGGTGGTGATTGG 4170 Query 104765 TCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAA 104824 ||||| |||||||| | |||| ||||| | || | |||||| ||||||| Sbjct 4169 TCTCTGTTTTGTCCCAATGAGGCTCCTGGATTACATGAAATCTGGGGTGACGAGTTTGTT 4110 Query 104825 GCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGAT 104884 || || || ||| ||||| ||||| | || | | ||| | ||| | Sbjct 4109 GCTCTCTATGAAAAATACGAACGTGAAGGAAGAGCTAGAGAAACGATCAAGGCTCAAAAG 4050 Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 ||||| | || ||| | | ||||||| ||||| || | |||| ||| || || || Sbjct 4049 CTGTGGTATGCCATTTTGGAAGCTCAAACGGAGACAGGCAATCCATTCATACTCTATAAG 3990 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 || || |||||| |||||||||||| | || |||||| ||||||| | |||||| Sbjct 3989 GATGCTTGTAACAGAAAGAGTAATCAGCAAAACTTGGGTACGATCAAGTGCAGCAATCTG 3930 Query 105005 TGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 105063 ||||||||||| | |||| | || | ||||| ||||| |||||| | || || Sbjct 3929 TGTACAGAAATTGTTGAATACTCGAGTC-CTGATGAAGTCGCTGTCTGTAACTTGGCCTC 3871 Query 105064 AATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCA 105123 || ||||| || | ||||| |||| | ||| || | | ||||| ||||||| || Sbjct 3870 CATTGCTCTGCCTACCTATGT-GATCAATAGAGAA--AAGTATGATTTCCAAAAACTGCA 3814 Query 105124 CGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC 105183 ||| ||||| || | |||| | |||| | |||| | || |||| |||| || || Sbjct 3813 CGATGTTACCAAGGTTATCACTAGAAACTTGAACAAGATCATCGATATCAATTACTATCC 3754 Query 105184 CGTTGAGACTGCTCGTAA-ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 || || || || ||| || | ||||||| | || |||||| | |||||||| | Sbjct 3753 TGTCATCGAAGC-CGAAAGATCCAACAAGAGACACAGACCGATTGGTTTAGGTGTTCAAG 3695 Query 105243 GTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 105302 | | || || ||||| | ||| | |||| ||||| ||||| ||| | Sbjct 3694 GCTTAGCCGACACTTTCATGGCTCTTCGTTATCCATTCGATTCACCTGAAGCCAAGCAGT 3635 Query 105303 TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGG 105362 | || | || ||||| ||||| || || || || || || || | ||||||| Sbjct 3634 TGAACATTCAAATCTTTGAAACCATCTACCATGCTGCCCTGGAAGCCTCCTGCGAGTTGG 3575 Query 105363 CAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTT 105421 | || |||| || || ||||||| ||| || || | || |||||| | || Sbjct 3574 CTGAAAAGTATGGACCTTACGAAACCTATGAAGGCAGCCCTGTGTC-CAAGGGTATCCTG 3516 Query 105422 CAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGAAGCTCTCAAGGA 105480 |||| ||| |||| |||| || | ||| | | | || ||||||| || |||||||| Sbjct 3515 CAATATGACATGT-GGAATGTCACACCTACCAACCTCTGGGACTGGGCCGCACTCAAGGA 3457 Query 105481 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTC 105540 | || || | ||| | || ||| ||| || | ||||| ||||| || ||||| Sbjct 3456 AAAGATTGCTAAGCATGGTGTCCGCAACTCTCTGCTGGTTGCTCCTATGCCTACTGCCTC 3397 Query 105541 CACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 ||| | ||||| | ||| |||||||| |||||||| ||||| | ||| |||| Sbjct 3396 CACTTCTCAAATGCTCGGTTTCAATGAATGTTTTGAACCTTACACATCCAACTTCTA 3340 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 105795 TCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCT 105854 ||||||||||||| || ||||||||| | ||||| |||||||||||| |||| ||| Sbjct 3142 TCATTGACATGGCTGCTGATCGTGGTGCGTATATTGACCAAAGTCAAAGTTTGAACATCT 3083 Query 105855 TCATGG-AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAG 105913 | |||| | ||||| || |||||| | ||||||| | || | ||| | ||| Sbjct 3082 TTATGGCTGAACCCAACTTTG-GTAAGCTCACCAGTATGCACTTTTATGGCTGGCAAAAG 3024 Query 105914 GGTCTCAAAACGGGGATGTATTACCTCCG 105942 || | || || || ||||||||||| || Sbjct 3023 GGATTAAAGACAGGCATGTATTACCTTCG 2995 >seq106 Length=79482 Score = 149 bits (164), Expect = 7e-31 Identities = 294/422 (70%), Gaps = 11/422 (3%) Strand=Plus/Minus Query 94526 TCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAACTTTG 94585 || |||| ||||||||||| || ||||| |||||| ||| || | | | |||||| Sbjct 37821 TCTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTT 37762 Query 94586 CTGATGAGGTGCA-ATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAAT-GA 94643 |||||| || | || | ||||||| | || ||||||| | ||| |||| || || Sbjct 37761 GTGATGAAGTCAAGATTC-CTGAAGCTAAATGTTTCTATGGCTTTCAAA-TCATGATTGA 37704 Query 94644 AATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGA 94703 || | || | || || |||||| | || |||| ||||| || ||| || Sbjct 37703 AAACATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAACCAAGA 37644 Query 94704 GAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAG-CGGATT 94762 ||| | ||||||| || || | || | || ||||| ||| |||||| | |||| Sbjct 37643 GAAAGAAATGCTCTTTTCTGCTATTGACACTATCCCTTGTAT-CAAGAGAAAGGCTGATT 37585 Query 94763 GGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTG 94822 |||| | |||||| || |||| || |||||||||||||||| || | || |||| Sbjct 37584 GGGCCTTCAAGTGGATTTCCTCAAA--CG-GTTCCTTTGCTGAGCGCCTTGTTGCCTTTG 37528 Query 94823 CGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAG 94881 | ||| || ||||||||||||||||||||||| ||| | || | |||||||||||| Sbjct 37527 CTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTT-TGCTTCCATCTTTTGGCTCAAGAAA 37469 Query 94882 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 94941 || ||| | ||||| ||| | ||| ||| || | |||| |||||| || || || Sbjct 37468 CGTGGTTTGATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGTCTT 37409 Query 94942 CA 94943 || Sbjct 37408 CA 37407 >seq251 Length=24034 Score = 91.5 bits (100), Expect = 2e-13 Identities = 198/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || |||||||| ||||| |||||||| | ||| ||| ||||||||||| | | Sbjct 13490 TTGATGATCAGACCCTTAATGTGTGAACCGTCATGATCTTGATCTGTCATGATCATCAAA 13431 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || ||||| || | ||| |||| || ||| | ||||| || ||||| || | || Sbjct 13430 CGGCCATATCGCAACTCATCAACACTTTCATACTTTTTACCATGCTGAAGGCCAAGAATA 13371 Query 169280 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACA 169339 ||||| | |||| |||| ||| |||| | | ||| | || ||||| Sbjct 13370 GCCTTGATGTTTTTGATTTCTTCATTTTTCATGAGTTCAGCATTAGAAACGTCACGAACG 13311 Query 169340 TTCTTACA-CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAG 169398 ||| ||| || ||||| | ||||| ||||| |||| |||||||| || || || | Sbjct 13310 TTC-AACAGTTTGCCACGGATGGGGAATACACCATAGTAGTCACGACCCACTACTGACAT 13252 Query 169399 ACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 || | | || | ||| || || ||||| || |||| ||| || || || Sbjct 13251 GCCACTCAAAACAAGCGACTTAGCTGAATCACCTTCTGTGATGATCAGAGTGCA 13198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256717174400