Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq70 145 8e-30 seq106 107 2e-18 seq53 96.9 4e-15 >seq70 Length=105670 Score = 145 bits (160), Expect = 8e-30 Identities = 312/462 (68%), Gaps = 6/462 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| |||| ||| | ||| |||||||| ||||| | || || || || || Sbjct 4653 TGAGACATACAACTTGATGTCCGAAAGATACTTTACACACGCTAGTCCTACTCTATTTAA 4594 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || || || |||||||| |||||| || | | ||||| || || || Sbjct 4593 TGCAGGCACACCTCGTCCCCAGATGTCTTCTTGCTTCTTGCTCACCATGAAAGAAGATTC 4534 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 |||||| || ||||| ||||||||||| ||||| || ||||||||| | || || Sbjct 4533 GATCGAAGGTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCCAAGACAGCAGGCGG 4474 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||| || | || | | | ||| | ||||| | || || || || || |||| Sbjct 4473 TATTGGCTTAAACATTCAC-AACATTCGTGCTAGTGGATCATACATTGCCGGCACCAACG 4415 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | || | ||| | |||| ||||| || || |||||||| ||||| || || ||| Sbjct 4414 GTTACTCCAACGGATTGTTGCCCATGCTACGTGTTTTCAACAATACGGCTCGTTATGTCG 4355 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | || |||||| ||||| ||| | ||||| || ||| | || || ||||| || | Sbjct 4354 ATCAAGGTGGTAATAAGCGTCCGGGCGCATTCGCAATGTACTTGGAACCTTGGCATGCAG 4295 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCCG 53658 ||||| | ||| | || |||| || || | || || || | ||| || Sbjct 4294 ACATTTTTACCTTTTTAGACTTGCGAAAAAACTTTGGCAAAGACGAAATCAGGGCT--CG 4237 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCA 53700 ||| ||||| ||||| |||||||| || || |||||||| Sbjct 4236 TGATCTGTTCTATGCTCTCTGGATTCCTGATCTTTTCATGCA 4195 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACC--AGTCCCAGTCTCTGAACATCT 55832 ||||||||| |||||||||||||||||| || |||| |||| || | ||||||||| Sbjct 3140 ATTGACATGGCTGCTGATCGTGGTGCGTATATTGACCAAAGTCAAAG--TTTGAACATCT 3083 Query 55833 TCATGG-AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 | |||| ||| || | ||| ||| | | | ||||||||||| || ||| | ||| Sbjct 3082 TTATGGCTGAACCCAACTTTGG-TAAGCTCACCAGTATGCACTTTTATGGCTGGCAAAAG 3024 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||| | ||||| || ||||| || || || || || Sbjct 3023 GGATTAAAGACAGGCATGTATTACCTTCGTACACG 2989 >seq106 Length=79482 Score = 107 bits (118), Expect = 2e-18 Identities = 196/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||| | | ||||||||||| || | | || ||||| | ||||| ||| Sbjct 37413 CCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAAACCACGTTTC 37472 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||||||||||| | ||||||||| ||||||||| ||||||||| |||||| Sbjct 37473 TTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAG 37532 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 || |||||||| | || || | | | || | ||||| | ||||| ||||| Sbjct 37533 GCAACAAGGCGCTCAGCAAAGGAACCGTTTGAGGAAATCCACTTGAAGGCCCAATCAGCC 37592 Query 74949 TTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGA 75008 |||| |||| ||||| ||| || || || ||||| || | ||||||| | | Sbjct 37593 TTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTTTCTCTTGGTTA 37652 Query 75009 TCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 || |||| ||||||||| ||| ||| || || | ||||| Sbjct 37653 TCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAAT 37699 >seq53 Length=125223 Score = 96.9 bits (106), Expect = 4e-15 Identities = 264/402 (66%), Gaps = 2/402 (0%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 || |||||||| || || || || || |||||||||||||||| | | ||||| | Sbjct 91269 AAATACTTTACTCATGCTACACCTACATTGTTCAACGCTGGTACACCTAAACCTCAATTA 91328 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || |||||||| || ||||| || ||| ||||| |||||||| || || || Sbjct 91329 TCTAGTTGCTTCCTTGTTCAAATGAAAGAGGACAGTATCGAAGGCATCTATGATACTATC 91388 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG-T 53445 | ||||| | |||||||||| | || ||| | || | |||||| || | | Sbjct 91389 ACCACTTGTGCTCGTATCTCCAAGTCTGCTGGCGGTGTTGGCGT-TGCTGCTCAAAAGAT 91447 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 |||| ||| | ||| || || ||||| | || |||| ||| | || || Sbjct 91448 TCGTGGCTCTGGCTCTTATATCGCAGGAACAAACGGTACCTCCAATGGCATCATTCCAAT 91507 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 |||||| ||||| || |||| || || | || | || || ||||| || ||||| || Sbjct 91508 GCTCCGAGTCTTTAATGACACCGCTCGCTTTGTGACACAAGGAGGTGGTAAACGCAACGG 91567 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 || || |||| | || || ||||| | ||| | | || || | || |||| Sbjct 91568 TAACTTTGCTGTCTATATAGAACCTTGGCATGTCGATGTATTCGAATTCTTGGACTTGCG 91627 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||| | |||| || || |||||| || ||| |||| Sbjct 91628 AAAGAACAATGGTGCTGAGGAAATGCGCGCGCGCGACTTGTT 91669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||| | | ||| ||| |||||||||||| |||| | | | | ||||||||| Sbjct 92921 TCTCAAAAAACTATACAAGACCGTGTGGGAGATTTCACAAAGAACTATTATTGACATGGC 92980 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA-TGGAGAATC 55844 |||||| | || || | || || || || || ||| |||| | || | || ||| | Sbjct 92981 CGCTGATAGAGGAGCCTTTATTGATCAATCTCAATCTATGAATTTATTTACTGCCGAACC 93040 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | |||| || |||| || ||||||||||| | |||||||||||||| ||||| | Sbjct 93041 AAACTTTGGCAAA-TTGACTTCTATGCACTTTTATGCCTGGAAGAAGGGACTAAAGACTG 93099 Query 55905 GTATGTACTATCTG 55918 | ||||||||| || Sbjct 93100 GCATGTACTATTTG 93113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212169488000