Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq109 183 3e-41 seq165 127 2e-24 seq91 96.9 4e-15 seq53 96.9 4e-15 seq60 89.7 6e-13 seq93 86.0 7e-12 >seq109 Length=78937 Score = 183 bits (202), Expect = 3e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 ||| |||||||||||||||||||| ||||| || ||||| |||||| | || || || || Sbjct 18524 TATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTCGAATC 18465 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 ||| | || | ||| | || || ||||| |||||||| || |||||||| || Sbjct 18464 TTCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGA 18405 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || ||||| || ||||||||||| |||||||| |||| |||||||||| ||||| Sbjct 18404 TCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTA 18345 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| | ||||||||||| |||||||| | ||| | ||||| || ||||| Sbjct 18344 TAACATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGG 18294 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| ||| | || | | | || | || || | ||| | Sbjct 18292 ATGCAAATATTTGTCAAGACACTTGCTGGAACGGCAGTTTTGTTAGAAGTCAACTCATCT 18233 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | ||| | | |||| |||||||| || ||||| | ||||| ||| | || Sbjct 18232 GATACCGTTGATATTGTGAAAAGCAAAATTCAAGAAAAGGAAGACATTCCGCCAAATCAA 18173 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| |||||||| || |||||||| ||| || ||| || || ||||| Sbjct 18172 CAACGTTTAATCTTTGCTGGCAAACAACTCGAAAATGGTCATACTCTGAATGAATATAAC 18113 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 |||||| ||||| | | | |||| || | |||| || |||| Sbjct 18112 ATCCAAAGTGAATCTATTATAGATCTTCTCCTAAGTCTACGTGGTG 18067 >seq165 Length=49949 Score = 127 bits (140), Expect = 2e-24 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||| || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 37970 AAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTTATCTTTGCCGGTAAA 37911 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||||||| || | ||||||| | ||| ||||| || ||||||||||||| ||||| || Sbjct 37910 CAACTCGAAGACGGTCGTACCTTGAGC-GACTACAACATCCAAAAGGAATCTACTCTCCA 37852 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | |||||||| ||||| Sbjct 37851 CTTAGTTCTCCGTCTTCGTGGTGG 37828 >seq91 Length=92626 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||| || || || || ||||| || || ||||| || || Sbjct 70129 TGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCA 70070 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| ||||| || ||||| |||||||| || | ||||||| | || || || Sbjct 70069 ACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAA 70010 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || ||||| | || | |||||||| ||||| Sbjct 70009 CATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGG 69962 >seq53 Length=125223 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 80043 CAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAG 80102 || |||||||||||| ||||| || |||||||||||| | || | |||||||||| | | Sbjct 93113 CAAATAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAAGTCA- 93055 Query 80103 CTTCGCAAGTGTGGGGTTCTCCA-TGAAGATGTTCAGAGACTGAGACTGACAGATGAAAG 80161 || || | || ||||| || | || | |||| ||| ||||| ||| || || | Sbjct 93054 ATTTGCCAAAGTTTGGTTCGGCAGTAAATAAATTCATAGATTGAGATTGATCAATAAAGG 92995 Query 80162 CCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | || | ||| || ||||| |||||||| | |||||| ||| ||||| || || Sbjct 92994 CTCCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCACACGGT 92940 >seq60 Length=120286 Score = 89.7 bits (98), Expect = 6e-13 Identities = 211/316 (67%), Gaps = 11/316 (3%) Strand=Plus/Minus Query 24779 GGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTG 24838 ||| || || || || ||||| || ||| ||||| || | || | | | || || Sbjct 116488 GGAAACAACACCCTTCTATCCCCGTTCCCCTTATGGTGTAGCCAAACTTTATGGCTATTG 116429 Query 24839 GATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAA 24898 ||| || ||||||||||| | | || | ||| || || || ||||| ||||| Sbjct 116428 GATTACGGTCAACTACCGTGAATCATACAACATGTTTGCCTGTAATGGTATTCTCTTCAA 116369 Query 24899 CCATGAGTCGGAGCGTCGGGGACCTGAATTTGTTACACGAAAGATTACTCTTGGTATTG- 24957 |||||| || ||||| || | | || ||||| ||||||||||||| || | ||| Sbjct 116368 CCATGAATCACCTCGTCGTGGTCGTACTTTCGTTACCCGAAAGATTACTCGTGCTGTTGC 116309 Query 24958 -----ACCA-TTGGATCAAGACAAGGGCACCTATTGAGCTGGGAAACCTAGATGCCAAAC 25011 ||| |||| | | |||| | || || | || || || | ||||| || | Sbjct 116308 GGACATCCACTTGG--GACGTCAAGAGTGCC--TTTATCTCGGTAATATTGATGCTAAGC 116253 Query 25012 GTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATA 25071 |||||||||| ||||| || || ||||| | ||||||| |||||| || || || Sbjct 116252 GTGATTGGGGACATGCTCGTGATTATGTCGAAGGTATGTGGCTCATGCTGCAGCAAGATC 116193 Query 25072 AGCCAGAGGATTTTGT 25087 |||| | ||||| || Sbjct 116192 AGCCTCAAGATTTCGT 116177 >seq93 Length=91516 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| |||||||||||||| |||||| | || || || || Sbjct 91400 AATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACCATTACTTTGGAAGTCGAATCTTC 91459 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 |||||| || | ||| | ||| || || || |||||||| || || ||||| || Sbjct 91460 TGATAGTATCGAAAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCTCCTGA 91516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306407827200