Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq109 170 4e-37 seq11 154 3e-32 seq165 136 9e-27 seq91 127 5e-24 seq93 102 2e-16 >seq109 Length=78937 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| || || ||||| |||||||| || ||||| | |||||| Sbjct 18309 AGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCT 18368 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || ||||| || |||||||| |||||||||| ||||||||||| Sbjct 18369 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 18428 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||||||||| || || ||||| |||||||| ||| || || | ||| || ||| Sbjct 18429 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTC 18488 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| ||||| | ||||| Sbjct 18489 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 18520 >seq11 Length=236632 Score = 154 bits (170), Expect = 3e-32 Identities = 136/167 (81%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| | ||||||||| || |||||||||||||| ||||| | ||| | Sbjct 177 ACGAAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACTCAAAG- 119 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| ||||||||||| ||||| || || |||||||| |||||||| | | Sbjct 118 TACGACCATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATAC 59 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 |||||||||| ||||||||||| || || |||||||| | |||||| Sbjct 58 CTTCCTTGTCTTGGATCTTTTGCTTGACATTTTCGATACTATCAGAG 12 >seq165 Length=49949 Score = 136 bits (150), Expect = 9e-27 Identities = 133/169 (79%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| ||||| || || ||||||||||| || || | ||| || Sbjct 37833 ACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAA-GG 37891 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||| || || || || || |||||||| ||||||||||||||||||| | Sbjct 37892 TACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATAC 37951 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 |||||||||| || |||||||| || ||||| || |||||||| || || Sbjct 37952 CTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGGAACT 38000 >seq91 Length=92626 Score = 127 bits (140), Expect = 5e-24 Identities = 142/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 210875 GGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGAT 210934 ||||| | | ||| | |||||| | || || | |||||| || || || ||||| || Sbjct 69949 GGGTTCGATGATACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAAT 70008 Query 210935 GTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTT 210993 ||| ||||| | ||||| | | || ||||| || || || || ||||| || || |||| Sbjct 70009 GTTGTAATCACTCAAGG-TACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTT 70067 Query 210994 GTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGT 211053 |||| |||||||| | |||||||| || ||||||||||| || || || || ||||||| Sbjct 70068 GTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGT 70127 Query 211054 CAGAGCT 211060 ||||||| Sbjct 70128 CAGAGCT 70134 >seq93 Length=91516 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 |||||||| | ||||||||||| ||||||||||| || ||||||||||| | ||||| Sbjct 91516 TCAGGAGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTTTCGATACTATCAGAA 91457 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || | ||| || ||||| || || ||||||||||| || | |||||||| Sbjct 91456 GATTCGACTTCCAAAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 91398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143683084400