Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq11 158 3e-33 seq165 140 8e-28 seq109 140 8e-28 seq91 120 7e-22 seq93 98.7 2e-15 >seq11 Length=236632 Score = 158 bits (174), Expect = 3e-33 Identities = 135/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| ||||| ||||||||||||| |||||||| |||||| Sbjct 177 ACGAAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACTCAAAGT 118 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || ||||| || || |||||||| || || || ||||| Sbjct 117 ACGACCATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACC 58 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGG 225658 |||||||||||||||||||||||| ||| |||||| | || |||| Sbjct 57 TTCCTTGTCTTGGATCTTTTGCTTGACATTTTCGATACTATCAGAGG 11 >seq165 Length=49949 Score = 140 bits (154), Expect = 8e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| ||||| ||||||| ||||| ||| ||| || Sbjct 37833 ACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGT 37892 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || || || |||||||| ||||||||||| || |||||||| Sbjct 37893 ACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACC 37952 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 |||||||||||| ||||||||||| || || |||||||| || Sbjct 37953 TTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGGA 37997 >seq109 Length=78937 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||| ||||| ||||| | || || ||| | || | |||||| Sbjct 18309 AGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCT 18368 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| ||||| || |||||||| || || |||||||||||||||||| Sbjct 18369 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 18428 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||||| || ||| ||||| ||||| || | ||| || ||||| || || ||| Sbjct 18429 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTC 18488 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | || | |||||| Sbjct 18489 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 18520 >seq91 Length=92626 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || ||||| ||||| | |||||||| ||| || Sbjct 69967 ACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGT 70026 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || || ||||| || || |||||||| || || || ||||| Sbjct 70027 ACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACC 70086 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 |||||| ||||||||||||||||| ||| || |||||||| ||| Sbjct 70087 TTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCAGAG 70132 >seq93 Length=91516 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 225598 TCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 || || || ||||||||||||||||||||||||||||| || |||||| | || || Sbjct 91516 TCAGGAGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTTTCGATACTATCAGAA 91457 Query 225658 GTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | ||| || || || || || |||||||| || | ||| |||| ||| | ||||||||| Sbjct 91456 GATTCGACTTCCAAAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 91398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192522643588640