Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq109 113 1e-19 seq11 104 5e-17 seq165 98.7 2e-15 seq91 86.0 1e-11 >seq109 Length=78937 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||||||||| || ||||| ||||| || ||| || || | |||||| Sbjct 18309 AGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCT 18368 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| || | || || || | | || |||||||| ||| Sbjct 18369 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 18428 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| |||||||| ||| | || | |||| ||| || ||||| | |||||| || Sbjct 18429 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTC 18488 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || |||| ||||| Sbjct 18489 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 18520 >seq11 Length=236632 Score = 104 bits (114), Expect = 5e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||||||||| |||||||||||||||||||| ||||| | |||||| Sbjct 167 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACTCAAAGTACGACCATCT 108 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||| || || | || || || | | ||| |||||||| ||| Sbjct 107 TCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTGTCT 48 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTC 152059 || || ||||| |||||| | || | || || || ||| ||||| Sbjct 47 TGGATCTTTTGCTTGACATTTTCGATACTATCAGAGGACTCGACTTC 1 >seq165 Length=49949 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || |||||||| || |||||||||||||| ||| || || | || ||||| || | Sbjct 37852 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCGAGTTGT 37911 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| |||||||| | || ||||| | | || |||||||| |||||||| ||| Sbjct 37912 TTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTT 37971 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT 152050 || ||||| | || | | |||| ||||| Sbjct 37972 TGCTTGACGTTGTCAATGGTGTCGGAACT 38000 >seq91 Length=92626 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||| ||||||||||| || || | || ||||| | Sbjct 69982 CAAG-TGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGA 70040 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||| || || | || || || | | ||| |||||||| ||||| | Sbjct 70041 GTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGA 70100 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT 152050 | ||||| |||||| | || | | |||| || || Sbjct 70101 TCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 70134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812521335760