Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq109 136 1e-26 seq165 132 1e-25 seq11 122 2e-22 >seq109 Length=78937 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || ||||| || || || | || || ||| || ||| Sbjct 18517 CAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTCGAATCTTCTGAC 18458 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || |||||||||||||| ||||| ||||| || ||||| || || ||| Sbjct 18457 ACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAA 18398 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||| ||||||||||| | || || ||| |||||| | Sbjct 18397 CGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAACATT 18338 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 18337 CAAAAGGAATCTACTCTTCA-CTTG 18314 >seq165 Length=49949 Score = 132 bits (146), Expect = 1e-25 Identities = 121/150 (81%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || |||||||| || |||||||| ||||||||||| ||||| ||||| || ||||| Sbjct 38000 AGTTCCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCT 37941 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 ||||| ||||| |||||||| ||||| ||||| |||||||| || | || |||| ||| Sbjct 37940 GACCAACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTAC-CTTGAGCGA 37882 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCA 178123 || ||| ||||||| ||||| || || || Sbjct 37881 CTACAACATCCAAAAGGAATCTACTCTCCA 37852 >seq11 Length=236632 Score = 122 bits (134), Expect = 2e-22 Identities = 113/142 (80%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| || ||||| |||||||| || ||||| ||||| |||||||| || || ||||| Sbjct 22 ATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCTCCTGATCAACAACGT 81 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || || |||||||| || |||||||||||||| | ||| | ||||| ||| ||||| Sbjct 82 CTCATTTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTTTGAGTGATTACAACATCCAA 141 Query 178107 AAAGAATCAACACTGCATCTTG 178128 |||||||| || || || |||| Sbjct 142 AAAGAATCTACTCTTCA-CTTG 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722563228640