Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4556 150 2e-31 seq3946 141 1e-28 >seq4556 Length=51470 Score = 150 bits (166), Expect = 2e-31 Identities = 329/481 (68%), Gaps = 20/481 (4%) Strand=Plus/Plus Query 16649 TCTTGTTTATGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTA 16708 ||||||| |||| |||| | ||| ||||| ||| || ||||| |||||||| Sbjct 9561 TCTTGTTCATGA----CACCAGCACGTTGATAATCAGAAACACGCTTTTCAAAAAAGTTG 9616 Query 16709 GTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATA 16766 || ||||| | || || || | ||||| || || || || |||||||| || |||| Sbjct 9617 GTCTTGCCTTGAAGGGAGATCATGTCCATAAAGTCGAATGGGTTAGTAGCATTGTAAATC 9676 Query 16767 TTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACA 16826 || | || | || || || | || | | ||| || || ||||| ||||| || |||| Sbjct 9677 TTGTCGAAT--CCAAGAGCGACCATGAGACGATCAGCGACGAATTCGATATACTGACACA 9734 Query 16827 TTAAT-TCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC 16885 | || | || |||||| || || | || || ||||| |||| || ||| ||| Sbjct 9735 TCAAGGTAGC-GTTCATACCGATCAATGCAACAGGCAGAGCATCCGACAGGAATTCTTGT 9793 Query 16886 TCTATAACAACCGCTTCCTTAATAATA--CTAGCAACTCGTTCCTCGGACGGTGTATGTT 16943 || ||| | || ||||| ||| || || | || |||| | ||| | || |||| Sbjct 9794 TCGATACCGACGGCTTCTACAATGATGTCCTTG--ACGCGTTGTT--GACTGGGT-TGTT 9848 Query 16944 TAAG-ATGTT--TAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGA 17000 || | |||| | |||| ||||| || || || || | || || || | | || Sbjct 9849 TACGGATGTGGGTGAACAAGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCACGACAGA 9908 Query 17001 TAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCG 17060 | | ||| ||| ||| ||||| ||||||||| || ||||||||||||||||| || | Sbjct 9909 TCAATTCATTACTAAAGGTCAAACCGGGCATCAAACCACGTTTCTTTAACCAAAAGATGG 9968 Query 17061 CGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGG 17120 |||||| || ||||||||||| || || ||||| | ||||| |||| | ||||| | Sbjct 9969 AGGCGAATGAGCCAGAAAAGAAGATGCCTTCGACAGCGGCAAAGGCGACCAGACGTTCAG 10028 Query 17121 C 17121 | Sbjct 10029 C 10029 >seq3946 Length=52427 Score = 141 bits (156), Expect = 1e-28 Identities = 309/461 (67%), Gaps = 10/461 (2%) Strand=Plus/Plus Query 16649 TCTTGTTTATGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTA 16708 ||||||| |||| |||| | ||| ||||| |||||| ||||| |||||||| Sbjct 26009 TCTTGTTCATGA----CACCAGCACGTTGATAATCAGAAACGCGCTTTTCAAAAAAGTTG 26064 Query 16709 GTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATT 16768 || || || | || || || | ||||| || ||||| ||||| || || | | ||| Sbjct 26065 GTCTTTCCTTGCAGTGAAATCATATCCATAAAGTCAAACGGATTCGTTGCCATATAAATT 26124 Query 16769 TTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATT 16828 ||| | |||| || | | || | | ||| || || ||||| || ||||| ||||| Sbjct 26125 TTATCGAACCCAAGAGCAACCATAAGACGATCAGCAACGAATTCAATGTATTGACACATC 26184 Query 16829 AATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCT 16888 || | ||||| || || | || || | || || || || ||| ||| || Sbjct 26185 AAAGTAGAATTCATACCAATCAATGCAACAGGTAATGCATCGGTTAAGAATTCTTGTTCA 26244 Query 16889 ATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGA 16948 || | || |||||| | |||||| || |||| | | ||| |||||| || Sbjct 26245 ATGCCTACAGCTTCCATTATAATATCCTTCACACGTTGTTGGCTAGGT---TGTTTACGA 26301 Query 16949 ---TGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || |||||| ||||| ||||||||| ||| | || ||||| | | || | | Sbjct 26302 ATATGAGTAAACAAAAGACAAGCGAAATCGGTATGAAGACCTTCGTCACGACAAATCAAT 26361 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || ||| ||| ||||| ||||||||| || |||||||| | |||||| || | || Sbjct 26362 TCATTACTAAAAGTCAAACCGGGCATCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCA 26421 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 || || || |||||||||||||| || || | ||||| || Sbjct 26422 AATGAGCCGGAAAAGAATATACCTTCTACTGCAGCAAAAGC 26462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517516061084880