Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3946 147 2e-30 seq4556 116 4e-21 >seq3946 Length=52427 Score = 147 bits (162), Expect = 2e-30 Identities = 301/438 (69%), Gaps = 12/438 (3%) Strand=Plus/Plus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 ||| |||||| |||||| ||||| || ||||| || ||||| | | || || | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 15973 CATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAAC--T 16030 |||||| ||||| ||||| || || | | || ||| | |||| || | ||| | Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGC---AACCAT 26147 Query 16031 AAT-CTATCTGCTACAAATTCTATATATTGACACATTAA-GTCGCAATTAATTCCTATAA 16088 || | ||| || || ||||| || ||||||||||| || || | |||| || || || | Sbjct 26148 AAGACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAG-AATTCATACCAATCA 26206 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | || || | || | ||||| |||| |||||| || | || ||||| | || | Sbjct 26207 ATGCAACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAA 26266 Query 16149 TATCGGTGGCTCGT-GTTTCAGACGGTGTATG-GTTTAGGTGTTTAAACATTAGACACGC 16206 |||| | | ||| ||| | | ||| | | || | || ||||| ||||| || Sbjct 26267 TATCCTTCACACGTTGTTGGCTAGGTTGTTTACGAATATGAGT--AAACAAAAGACAAGC 26324 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 ||| ||| ||| || |||||||| | | || | ||| || |||||| || || || Sbjct 26325 GAAATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGG 26384 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| || |||||||| | ||| || || | ||||||||| || |||||||||||||| Sbjct 26385 CATCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACC 26444 Query 16327 CTCAACAGATGCAAAAGC 16344 || || | |||||||| Sbjct 26445 TTCTACTGCAGCAAAAGC 26462 >seq4556 Length=51470 Score = 116 bits (128), Expect = 4e-21 Identities = 302/453 (67%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 ||| |||||| ||| || ||||| || ||||| || || || | | || || | || Sbjct 9583 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 9642 Query 15973 CATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 |||||| || || || |||||||| || |||| | | || | || || | | Sbjct 9643 CATAAAGTCGAATGGGTTAGTAGCATTGTAAATCTTGTCGAAT--CCAAGAGCGACCATG 9700 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAG-TCGCAATTAATTCCTATAAG 16089 | | ||| || || ||||| ||||| |||||||| ||| | || || || || || | Sbjct 9701 AGACGATCAGCGACGAATTCGATATACTGACACATCAAGGTAGCG-TTCATACCGATCAA 9759 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 | || || ||||| | | | |||| |||||| || | || |||||| |||||| Sbjct 9760 TGCAACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACGGCTTCTACAATGAT 9819 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGG---TGTTTAAACATTAGACACGC 16206 || || | ||| || ||| | || || || || || | |||| ||||| || Sbjct 9820 GTCCTTGACGCGTTGTT--GACTGGGT-TGTTTACGGATGTGGGTGAACAAGAGACAGGC 9876 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 ||||| || || ||||| || | | ||| | ||| || ||| || || || || Sbjct 9877 AAAGTCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGG 9936 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| || |||||||||||||| || || | || ||||| || |||||||| || || Sbjct 9937 CATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCC 9996 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGC 16359 || |||| ||||| |||| | ||||| || Sbjct 9997 TTCGACAGCGGCAAAGGCGACCAGACGTTCAGC 10029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511385211023120