Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2600 114 1e-20 seq2841 95.1 1e-14 seq3464 82.4 7e-11 >seq2600 Length=207564 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| |||| || | || |||||||| || || ||| ||| | | Sbjct 124296 ATGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 124355 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||||||| | || ||||||| Sbjct 124356 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 124415 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||||||||||||||||| ||||||||||| |||||| || | | || | |||||| | Sbjct 124416 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAG--CGATTATA 124473 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||| || |||||||| || || || |||| ||||| ||| |||| || Sbjct 124474 ATATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGG 124522 >seq2841 Length=27215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| |||||||||||| | || |||||||||||||| || ||||| || ||| Sbjct 25574 AAAATTCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTAATTTTTGCTGGTAAA 25515 Query 29106 CAACTGGAAGA--TTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 ||||| ||||| || | | || | ||||||||||| || || ||||| || |||| Sbjct 25514 CAACTTGAAGAGGGTCGTACATTAAG--TGATTACAATATACAAAAAGAATCAACGCTTC 25457 Query 29164 ACATGGTGTTACGATTACGAGGAGG 29188 | |||| ||||| ||| |||| || Sbjct 25456 ATTTGGTATTACGTTTAAGAGGTGG 25432 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| |||||||||||| | || |||||||||||||| || ||||| || ||| Sbjct 25808 AAAATTCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTAATTTTTGCTGGTAAA 25749 Query 29106 CAACTGGAAGA--TTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 ||||| ||||| || | | || | ||||||||||| || || ||||| || |||| Sbjct 25748 CAACTTGAAGAGGGTCGTACATTAAG--TGATTACAATATACAAAAAGAATCAACGCTTC 25691 Query 29164 ACATGGTGTTACGATTACGA 29183 | |||| ||||| ||| || Sbjct 25690 AATTGGTATTACGTTTAAGA 25671 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| |||||||||||| | || |||||||||||||| || ||||| || ||| Sbjct 26042 AAAATTCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTAATTTTTGCTGGTAAA 25983 Query 29106 CAACTGGAAGA--TTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 ||||| ||||| || | | || | ||||||||||| || || ||||| || |||| Sbjct 25982 CAACTTGAAGAGGGTCGTACATTAAG--TGATTACAATATACAAAAAGAATCAACGCTTC 25925 Query 29164 ACATGGTGTTACGATTACGA 29183 | |||| ||||| ||| || Sbjct 25924 AATTGGTATTACGTTTAAGA 25905 >seq3464 Length=64949 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 29063 AGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAA 29122 |||| | ||| || |||||| | ||||||||||| || || ||| |||||||| Sbjct 37915 AGGTATCCCCCCTGACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCG 37856 Query 29123 AACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| || ||| ||||| ||||| |||||||||||||||||| |||| Sbjct 37855 TACTTTGAGCGACTACAACATTCAAAAGGAATCTACTCTTCACCTGGT 37808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428312163904730