Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2600 114 1e-20 seq2841 95.1 1e-14 seq3863 93.3 3e-14 seq3464 91.5 1e-13 seq2577 86.0 5e-12 seq2614 84.2 2e-11 seq1352 84.2 2e-11 >seq2600 Length=207564 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| |||| || | || |||||||| || || ||| ||| | | Sbjct 124296 ATGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 124355 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| || ||||||||| | || ||||||| Sbjct 124356 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 124415 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||||||||||||||| ||||||||| | |||||| || | | || | |||||| | Sbjct 124416 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAG--CGATTATA 124473 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| ||||||||||| || || || |||| ||||| ||| |||| || Sbjct 124474 ATATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGG 124522 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 |||||||| ||| ||||| |||||| | || ||||||||| | || |||||||| Sbjct 124146 AAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAACAACGTCTCATCTTTGCT 124205 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 ||||||||||| |||||| ||| | || || ||||||||||||||||| ||| Sbjct 124206 GGCAAACAATTAGAAGATGGTCGTACTCTCAGTGACTATAATATTCAAAAGGAATCAACT 124265 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| | ||| || |||||||||| || Sbjct 124266 CTTCATTTAGTGCTAAGATTACGAGGTGG 124294 >seq2841 Length=27215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || |||||||||||||| || ||||| || ||| Sbjct 25574 AAAATTCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTAATTTTTGCTGGTAAA 25515 Query 25179 CAATTGGAAGA--TTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTC 25236 ||| | ||||| || | | || | ||||||||||| ||||| ||||| || |||| Sbjct 25514 CAACTTGAAGAGGGTCGTACATTAAG--TGATTACAATATACAAAAAGAATCAACGCTTC 25457 Query 25237 ACATGGTGTTACGATTACGAGGAGG 25261 | |||| ||||| ||| |||| || Sbjct 25456 ATTTGGTATTACGTTTAAGAGGTGG 25432 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || |||||||||||||| || ||||| || ||| Sbjct 25808 AAAATTCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTAATTTTTGCTGGTAAA 25749 Query 25179 CAATTGGAAGA--TTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTC 25236 ||| | ||||| || | | || | ||||||||||| ||||| ||||| || |||| Sbjct 25748 CAACTTGAAGAGGGTCGTACATTAAG--TGATTACAATATACAAAAAGAATCAACGCTTC 25691 Query 25237 ACATGGTGTTACGATTACGA 25256 | |||| ||||| ||| || Sbjct 25690 AATTGGTATTACGTTTAAGA 25671 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || |||||||||||||| || ||||| || ||| Sbjct 26042 AAAATTCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTAATTTTTGCTGGTAAA 25983 Query 25179 CAATTGGAAGA--TTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTC 25236 ||| | ||||| || | | || | ||||||||||| ||||| ||||| || |||| Sbjct 25982 CAACTTGAAGAGGGTCGTACATTAAG--TGATTACAATATACAAAAAGAATCAACGCTTC 25925 Query 25237 ACATGGTGTTACGATTACGA 25256 | |||| ||||| ||| || Sbjct 25924 AATTGGTATTACGTTTAAGA 25905 >seq3863 Length=144211 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167 || |||||||||| ||| || || |||||| | || ||||||||| | || || | Sbjct 120103 ATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAACGTCTCATTT 120044 Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227 | || || ||||||||||||||| || || || ||||| ||||||||||||| Sbjct 120043 TCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGAGTGACTACAACATTCAAAAGGAAT 119984 Query 25228 CTACTCTTCACATGGT 25243 ||||||||||| |||| Sbjct 119983 CTACTCTTCACTTGGT 119968 >seq3464 Length=64949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 25136 AGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAA 25195 |||| | ||| || |||||| | ||||||||||| || || |||||||||||| Sbjct 37915 AGGTATCCCCCCTGACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCG 37856 Query 25196 AACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| || ||| ||||| |||||||||||||||||||||||| |||| Sbjct 37855 TACTTTGAGCGACTACAACATTCAAAAGGAATCTACTCTTCACCTGGT 37808 >seq2577 Length=30737 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || |||||| | ||||||||||| || || |||||||||||| ||| || ||| Sbjct 19886 GACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTGAGCGAC 19827 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| |||||||||||||| ||||||||| |||| Sbjct 19826 TACAACATTCAAAAGGAATCCACTCTTCACTTGGT 19792 >seq2614 Length=127402 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| ||||||| | || || |||||||||||| ||| ||| | | Sbjct 58957 ATGCAGATTTTCGTCAAAACCCTTACTGGTAAAACCATTACCTTGGAAGTCGAATCTTCT 59016 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | | |||||||||| ||| || || |||||| | || ||||| Sbjct 59017 GATAGTATTGAGAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 59076 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || || || | |||||| ||| || |||||||| Sbjct 59077 CAACGTTTGATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGTACTTTGAGTGATTACAAC 59136 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||||||||| ||||| ||| |||| Sbjct 59137 ATTCAAAAGGAATCCACTCTCCACTTGGT 59165 >seq1352 Length=65141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || || |||||||| ||| || | | Sbjct 15294 ATGCAAATTTTCGTCAAGACTCTCACTGGTAAGACCATTACTTTGGAAGTCGAGTCTTCT 15235 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || |||||||||| ||| ||||| || || | || |||||| Sbjct 15234 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCAA 15175 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | |||||||| || |||||||||||||| ||| || || |||||| Sbjct 15174 CAGCGTTTGATCTTTGCTGGTAAACAATTGGAAGACGGTCGTACTTTGAGTGACTACAAT 15115 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||||||||| || |||||| |||| Sbjct 15114 ATTCAAAAGGAATCCACCCTTCACTTGGT 15086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410773939928324