Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1352 120 3e-22 seq4556 107 2e-18 seq2614 95.1 1e-14 >seq1352 Length=65141 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || || ||||| || || ||||| |||||||| | || |||||| || Sbjct 16437 AAAATGCAAATCTTTGTTAAAACACTTACTGGCAAGACCATCACTTTGGAGGTCGAATCC 16378 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || ||| | | ||||| ||||| ||||||| | ||||| || || ||||| | || Sbjct 16377 TCTGATAGCATCGAAAACG-TCAAGCAAAAAATCCAAGACAAGGAAGGTATCCCTCCTGA 16319 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | |||| || || || ||||| || || | |||||||| ||||| Sbjct 16318 TCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTA 16259 Query 40866 CAACATCCAGAAGGA 40880 |||||| || ||||| Sbjct 16258 CAACATTCAAAAGGA 16244 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || |||||||| | || ||||| | | Sbjct 15750 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCT 15691 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || ||| | | | ||||| |||| |||| || || |||||||| || | || ||| Sbjct 15690 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAG 15631 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || ||||| |||| |||| ||||| | | ||||||||| Sbjct 15630 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAAC 15571 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| ||||| |||| || || Sbjct 15570 ATCCAAAAGGAATCCACTCTCCA 15548 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || |||||||| | || ||||| | | Sbjct 16206 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCT 16147 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || ||| | | | ||||| |||| |||| || || |||||||| || | || ||| Sbjct 16146 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAG 16087 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || ||||| |||| |||| ||||| | | ||||||||| Sbjct 16086 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAAC 16027 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| ||||| |||| || || Sbjct 16026 ATCCAAAAGGAATCCACTCTCCA 16004 >seq4556 Length=51470 Score = 107 bits (118), Expect = 2e-18 Identities = 271/408 (66%), Gaps = 8/408 (2%) Strand=Plus/Minus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 |||| | || || ||||| ||||| || || ||||| ||| |||||||||| ||| | Sbjct 10034 CCTTTGCTGAACGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCTGGCTCAT 9975 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 ||||| |||| |||||| | |||||||| || | |||||||| |||| || || || | Sbjct 9974 TCGCCTCCATCTTTTGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACCTTTAGTAATG 9915 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATT 117206 | | |||| | || || ||||| || |||||||||||| | |||||| || Sbjct 9914 AATTGATCTGTCGTGATGAAGGTCTTCACACTGACTTTGCCTGTCTCTTGTTCACCCACA 9855 Query 117207 TGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCG 117266 | | | ||| || ||||||| ||| ||| | || || |||| |||| Sbjct 9854 TCCGTAAACAACCCAGTCAACAACGCGTCAAGGACATCATTGTAGAAGCCGTCGGTATCG 9795 Query 117267 AGCAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC- 117324 | || ||||| | || || ||||| | ||| | || | || | || || || Sbjct 9794 AACAAGAATTCCTGTCGGATGCTCTGCCTGTTGCAT-TGATCGGTATGAA---CGCTACC 9739 Query 117325 --GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCC 117382 ||||| || || ||||| |||||||| || | || || ||| || | || | Sbjct 9738 TTGATGTGTCAGTATATCGAATTCGTCGCTGATCGTCTCATGGTCGCTCTTGGATTCGAC 9679 Query 117383 AAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 ||| ||||| | | ||||| | ||||||||| || | |||||| Sbjct 9678 AAGATTTACAATGCTACTAACCCATTCGACTTTATGGACATGATCTCC 9631 >seq2614 Length=127402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| || ||||| || || || || || || ||||| | || |||||| | Sbjct 58725 AAACATGCAAATCTTTGTAAAGACCCTTACAGGAAAGACTATCACTTTAGAAGTCGAATC 58784 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || ||| | ||| | ||| |||| || | ||||| || || || || | || Sbjct 58785 TTCTGATAGCATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCAGA 58844 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| ||||| | || || ||||| || || || | || ||||| ||||| Sbjct 58845 CCAACAACGTCTCATTTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTTTCAGACTA 58904 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||| || ||||| |||| || || Sbjct 58905 CAACATTCAAAAGGAATCCACTCTCCA 58931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515189793864160