Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4547 98.7 1e-15 seq3189 98.7 1e-15 seq2679 98.7 1e-15 seq2352 98.7 1e-15 seq2345 98.7 1e-15 seq1652 98.7 1e-15 seq2936 96.9 4e-15 seq1977 96.9 4e-15 seq1480 96.9 4e-15 seq754 96.9 4e-15 seq3185 93.3 5e-14 seq1352 93.3 5e-14 seq4299 91.5 2e-13 seq2841 91.5 2e-13 seq2614 89.7 6e-13 seq2600 89.7 6e-13 >seq4547 Length=1280 Score = 98.7 bits (108), Expect = 1e-15 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 736 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 795 Query 60131 CCGAGGATT 60139 |||| |||| Sbjct 796 CCGAAGATT 804 >seq3189 Length=8009 Score = 98.7 bits (108), Expect = 1e-15 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 7088 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 7147 Query 60131 CCGAGGATT 60139 |||| |||| Sbjct 7148 CCGAAGATT 7156 >seq2679 Length=5440 Score = 98.7 bits (108), Expect = 1e-15 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 2872 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 2931 Query 60131 CCGAGGATT 60139 |||| |||| Sbjct 2932 CCGAAGATT 2940 >seq2352 Length=4865 Score = 98.7 bits (108), Expect = 1e-15 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 2505 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 2564 Query 60131 CCGAGGATT 60139 |||| |||| Sbjct 2565 CCGAAGATT 2573 >seq2345 Length=5455 Score = 98.7 bits (108), Expect = 1e-15 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 501 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 442 Query 60131 CCGAGGATT 60139 |||| |||| Sbjct 441 CCGAAGATT 433 >seq1652 Length=1177 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || ||| |||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct 577 TTACTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 518 Query 60123 CTATACTACCGAGGATT 60139 |||||||||||| |||| Sbjct 517 CTATACTACCGAAGATT 501 >seq2936 Length=32062 Score = 96.9 bits (106), Expect = 4e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 31746 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 31687 Query 60131 CCGAGGAT 60138 |||| ||| Sbjct 31686 CCGAAGAT 31679 >seq1977 Length=1495 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || |||| |||| |||||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 450 TTATCTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 391 Query 60122 ACTATACTACCGAGGA 60137 ||||||||||||| || Sbjct 390 ACTATACTACCGAAGA 375 >seq1480 Length=2208 Score = 96.9 bits (106), Expect = 4e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 490 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 431 Query 60131 CCGAGGAT 60138 |||| ||| Sbjct 430 CCGAAGAT 423 >seq754 Length=772 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||| |||| |||||| |||||| ||||||||||||||||||||| |||| Sbjct 235 AAAAAGTAACTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 176 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||||||| || Sbjct 175 TCACCACTATACTACCGAAGA 155 >seq3185 Length=1536 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 60052 TTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 ||| || ||| |||| |||| |||||| |||||| ||||||||||||||||||| | Sbjct 1122 TTAAGATGAATGATCTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCTGG 1181 Query 60112 CATACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||| || Sbjct 1182 GATACTCACCACTATACTACCGAAGA 1207 >seq1352 Length=65141 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || | || || || | || || |||||||||||||| || Sbjct 16244 TCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAG 16303 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || || || || | || | | |||||||| ||||||||| |||| | Sbjct 16304 ATCAAACGTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGGATTTTTTGCTTGACGTTT 16363 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | || ||||| || || | |||||||| ||||| || || || || ||| Sbjct 16364 TCGATGCTATCAGAGGATTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGTGTTTTAACA 16423 Query 43173 AAGATTTGCATTTT 43186 |||||||||||||| Sbjct 16424 AAGATTTGCATTTT 16437 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| || || || | || || || | || || |||||||||||||| || Sbjct 15332 TCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAG 15391 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||| || || | || | || ||||||||| || ||||| |||| || Sbjct 15392 ATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATTC 15451 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | || || || || || | ||||||||||| || || | ||||| ||| Sbjct 15452 TCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGACA 15511 Query 43173 AAGATTTGCAT 43183 || |||||||| Sbjct 15512 AAAATTTGCAT 15522 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| || || || | || || || | || || |||||||||||||| || Sbjct 15788 TCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAG 15847 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||| || || | || | || ||||||||| || ||||| |||| || Sbjct 15848 ATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATTC 15907 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | || || || || || | ||||||||||| || || | ||||| ||| Sbjct 15908 TCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGACA 15967 Query 43173 AAGATTTGCAT 43183 || |||||||| Sbjct 15968 AAAATTTGCAT 15978 >seq4299 Length=1722 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || ||| |||| |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct 1653 TTACTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 1712 Query 60123 CTATACTACC 60132 |||||||||| Sbjct 1713 CTATACTACC 1722 >seq2841 Length=27215 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||||||||| || |||||||| | || || ||||| |||||||||||| Sbjct 25431 TCCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCACT 25490 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 | || || | || || || || |||||||| || || |||| || || |||| || Sbjct 25491 TAATGTACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGG 25550 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCA 43134 | | || ||| | ||| |||| ||| || | | | || ||| ||||| | Sbjct 25551 GATAC-CTTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAA 25609 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || ||||| || || ||||| |||||||||||||| Sbjct 25610 CTTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 25658 >seq2614 Length=127402 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||||||||||| ||||| || | || || || | || || Sbjct 58937 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTACGACCATCTTCG 58878 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || |||||||| || ||||| || || ||||| | || | | |||||||| | Sbjct 58877 AGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGG 58818 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||||| || | | | | | || ||||| || || | ||||| || || Sbjct 58817 ATCTTTTGCTTTACATTTTCGATGCTATCAGAAGATTCGACTTCTAAAGTGATAGTCTTT 58758 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTTTA 43188 || || || |||||||||||||||||||| |||| Sbjct 58757 CCTGTAAGGGTCTTTACAAAGATTTGCATGTTTA 58724 >seq2600 Length=207564 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||||| ||| ||||||||||| || |||||||| | ||| |||||||| ||||| || Sbjct 124528 CTATT-TCCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATA 124470 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||| | || || | || ||||| || || ||||| || || |||| || || || Sbjct 124469 ATCGCTTAATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATC 124410 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129 | || | | || ||||| ||||| ||| | | | | || ||| || Sbjct 124409 TGGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGA 124350 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || | ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 124349 TTCAACTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCAT 124296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571784963510480