Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2600 114 2e-20 seq2841 98.7 1e-15 seq2614 98.7 1e-15 >seq2600 Length=207564 Score = 114 bits (126), Expect = 2e-20 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | |||||||||||| | || ||||| || |||||||||||| Sbjct 124524 TTCCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCGC 124465 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || | | ||| |||| |||||| |||||||| || | |||||| ||||| || | Sbjct 124464 TTAATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTG 124405 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||| ||||| ||||| ||| ||| | Sbjct 124404 GAATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTCAA 124345 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| |||||||||||| ||||| | || || | ||||||||||| Sbjct 124344 CTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCAT 124296 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||||| | ||||| || ||||| | ||| ||||| ||| || |||||||| || Sbjct 124294 CCACCTCGTAATCTTAGCACTAAATGAAGAGTTGATTCCTTTTGA-ATATTATAGTCACT 124236 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| ||||||||||| |||||||| || | | ||| ||||| ||||| Sbjct 124235 GAGAGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATGAGACGTTGTTGATCAGGAGG 124176 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 124175 AATACCTTCCTTATCTTG 124158 >seq2841 Length=27215 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | |||||||||||| | || |||||||| |||||| ||||| Sbjct 25430 TTCCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCAC 25489 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || | | || || | |||||| ||||||||||| | |||||| ||||| || | Sbjct 25490 TTAATGTACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTG 25549 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || |||||||||||||| Sbjct 25550 GGATACCTTCTTTATCTTG 25568 >seq2614 Length=127402 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||| |||||||| || || || |||||||| || | || ||| ||| Sbjct 59393 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAAAGGGTACGGCCATCTTCT 59334 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||| ||||| | ||| || || |||||||| ||||| || ||||| Sbjct 59333 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGAGGAATCCCTTCCTTGTCTTG 59275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743483963230720