Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2614 91.5 1e-13 seq1352 87.8 1e-12 >seq2614 Length=127402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || ||||| || || | || |||| ||| | ||| |||||| || ||||||||||| Sbjct 59414 AAACCGCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCT 59355 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 || || |||| | || || || || || || || || || | || || ||||| Sbjct 59354 GAAAGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGA 59295 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | |||||||| ||||||||||||| || | || ||| | || || Sbjct 59294 GGAATCCCTTCCTTGTCTTGAATCTTTTGCTTTACATTTTCAATACTATCAGAAGACTCA 59235 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||||||||| || || || ||||| || || |||||||| Sbjct 59234 ACTTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCAT 59185 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| || || ||||||||||| || || ||| | || Sbjct 58940 AGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTACGACCATCT 58881 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || || || || |||||||| || || ||||| || | | |||||||| Sbjct 58880 TCGAGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCT 58821 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||||| || | || ||| | |||||||| || | ||||| || Sbjct 58820 TGGATCTTTTGCTTTACATTTTCGATGCTATCAGAAGATTCGACTTCTAAAGTGATAGTC 58761 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || || |||||||| ||||| Sbjct 58760 TTTCCTGTAAGGGTCTTTACAAAGATTTGCAT 58729 >seq1352 Length=65141 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| || || ||||||||||| || || ||| | || Sbjct 16223 AGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCT 16282 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGT 34295 || | |||||| || || || || | || || || || || || || || ||||||| Sbjct 16283 TCAAGCTGCTTACCAGCAAAGATCAAACGTTGTTGATCAGGAGGGATAC-CT-TCCTTGT 16340 Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 | || |||||||| | | | || ||| | |||||||| |||| ||||||| Sbjct 16341 CTTGGATTTTTTGCTTGACGTTTTCGATGCTATCAGAGGATTCGACCTCCAAAGTGATGG 16400 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| || || ||||| |||||||| ||||| Sbjct 16401 TCTTGCCAGTAAGTGTTTTAACAAAGATTTGCAT 16434 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| || || ||||| ||||| || || ||| | || Sbjct 15311 AGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCT 15370 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || | ||||| || || || | || ||||||||| Sbjct 15371 TCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCT 15430 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | || | || ||| | || || || |||| ||||||||| Sbjct 15431 TGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTT 15490 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | ||| || ||||| || ||||| Sbjct 15491 TTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15522 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| || || ||||||||||| || || |||| Sbjct 15539 AGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACCGTCT 15598 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| || || || ||||||||||| || ||||| || || | || |||||| || Sbjct 15599 TCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCT 15658 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | || | || ||| | || ||||| |||| |||||||| Sbjct 15659 TGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTC 15718 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | ||| || || || || ||||| Sbjct 15719 TTACCAGTCAAAGTCTTGACGAAAATTTGCAT 15750 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| || || ||||| ||||| || || ||| | || Sbjct 15767 AGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCT 15826 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || | ||||| || || || | || ||||||||| Sbjct 15827 TCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCT 15886 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | || | || ||| | || || || |||| ||||||||| Sbjct 15887 TGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTT 15946 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | ||| || ||||| || ||||| Sbjct 15947 TTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15978 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| || || ||||||||||| || || |||| Sbjct 15995 AGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACCGTCT 16054 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| || || || ||||||||||| || ||||| || || | || |||||| || Sbjct 16055 TCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCT 16114 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | || | || ||| | || ||||| |||| |||||||| Sbjct 16115 TGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTC 16174 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | ||| || || || || ||||| Sbjct 16175 TTACCAGTCAAAGTCTTGACGAAAATTTGCAT 16206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323054021648960