Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3946 196 4e-45 seq4556 104 2e-17 >seq3946 Length=52427 Score = 196 bits (216), Expect = 4e-45 Identities = 317/449 (71%), Gaps = 8/449 (2%) Strand=Plus/Plus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 |||||| ||| ||| | ||||||||| || || || ||||||| | |||||| | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAA 16065 |||||| ||||| ||||| ||| ||| ||||||| | ||||| |||| |||| Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAA-CCCAAGAGCAACCATAA 26149 Query 16066 T-CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 | ||| || || ||||| || || || ||| ||| | | ||||| || || ||| Sbjct 26150 GACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATG 26209 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 |||||| | ||| || ||||| || | || ||| || || ||||| || || |||| Sbjct 26210 CAACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATAT 26269 Query 16185 CTCTTACTACACTATTTAACGGAGG--GTTTAATAAG-TGTTTAAACATTATACAAGCAA 16241 | ||| |||| | | ||| ||||| || || |||||| | |||||| | Sbjct 26270 C-CTTC--ACACGTTGTTGGCTAGGTTGTTTACGAATATGAGTAAACAAAAGACAAGCGA 26326 Query 16242 AATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCA 16301 |||| ||| | |||||||| | || || || || || ||| || | ||| |||| Sbjct 26327 AATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCA 26386 Query 16302 TTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTT 16361 | | || ||||| |||| |||||| |||| |||||||| || |||||||||||||||| Sbjct 26387 TCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTT 26446 Query 16362 CAACTGCGGCAAATGCAACCAATCGCTCA 16390 | ||||| ||||| ||||| | |||||| Sbjct 26447 CTACTGCAGCAAAAGCAACAAGACGCTCA 26475 >seq4556 Length=51470 Score = 104 bits (114), Expect = 2e-17 Identities = 292/446 (65%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 |||||| ||| ||| | ||||||||| || || || || |||| | || || | || Sbjct 9583 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 9642 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAA 16065 |||||| || || || || | | | || || ||| |||| | | | || | Sbjct 9643 CATAAAGTCGAATGGGTTAGTAGCATTGTAAATCTTGTCGAATCCAAGAGCGACCATGAG 9702 Query 16066 TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 16125 | ||| || || ||||| |||||||| ||| || | |||||| || || ||| Sbjct 9703 ACGATCAGCGACGAATTCGATATACTGACACATCAAGGTAGCGTTCATACCGATCAATGC 9762 Query 16126 AACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATC 16185 |||||| | || || | | || | || ||| ||| || ||||| | || || || Sbjct 9763 AACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACGGCTTCTACAATGATGTC 9822 Query 16186 TCTTACTACACTATTTAACGGAGGGTTTAATAA-GTGTTTAAACATTATACAAGCAAAAT 16244 | || | | || | || ||||| | ||| | |||| | ||| ||||| | Sbjct 9823 CTTGACG-CGTTGTTGACTGGGTTGTTTACGGATGTGGGTGAACAAGAGACAGGCAAAGT 9881 Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304 || || | ||||| || | || || || || || ||| || | ||| ||||| | Sbjct 9882 CAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGGCATCA 9941 Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364 || ||||| || | |||||| || | ||| ||||| ||||||||||| || ||||| | Sbjct 9942 AACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCCTTCGA 10001 Query 16365 CTGCGGCAAATGCAACCAATCGCTCA 16390 | |||||||| || |||| || ||| Sbjct 10002 CAGCGGCAAAGGCGACCAGACGTTCA 10027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462485602127600