Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2418 149 5e-31 >seq2418 Length=25572 Score = 149 bits (164), Expect = 5e-31 Identities = 382/582 (66%), Gaps = 21/582 (4%) Strand=Plus/Minus Query 20214 AGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGT 20273 ||| || ||| | ||||| || ||||| || || |||||||| |||||||| | || || Sbjct 14337 AGAAGGTGATCTTGGTCCAGTCTATGGGTTCCAGTGGAGACACTTTGGAGCCAAGTACGT 14278 Query 20274 TGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTT 20333 ||| | || | ||| ||| ||||| | ||||| ||||| | || || || Sbjct 14277 TGATTGTGATACTGACTATAGTGGTCAAGGCATTGATCAGTTACAGCAAGTGATAGATAC 14218 Query 20334 AATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGT 20393 ||||||| || |||| || ||| |||||||| | | || ||||| || |||| | Sbjct 14217 CATTAAAAATAATCCAACAGATAGACGAATTATTCTCTCTGCTTGGAATCCTGCAGATAT 14158 Query 20394 GCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAA--- 20450 ||| |||||||||| ||||| |||||| | || || ||||| ||| | ||| Sbjct 14157 TCCTATAATGGCTTTACCTCCTTGTCATGCTTTTTGTCAGTTTTATGTTTCCAATCCGCC 14098 Query 20451 -TGA-ATTGT---CGTGTCAAA-------------TGTATCAACGATCCGCTGATATGGG 20492 | | || || |||| ||| | ||||| ||||| |||||||| Sbjct 14097 TTCAGATGGTGGACGTGCTAAACTATCTTGTGTGCTTTATCAGCGATCTTGCGATATGGG 14038 Query 20493 ACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGT 20552 | ||||| ||||| |||||||| |||||||| | || ||||||||||| || Sbjct 14037 GTTAGGTGTACCTTTTAATATTGCTTCCTATGCGCTCTTGACTCGCATGATTGCACACGT 13978 Query 20553 TACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAA 20612 |||||||| | | || || || | || || || || || | ||| ||||| || | Sbjct 13977 AACAGATTTGGATCCTGGAGAATTTATACATACTATGGGTGATACACATGTTTACATTGA 13918 Query 20613 TCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCG 20672 ||| | || | || ||| || || |||| | || | |||||||| || | Sbjct 13917 TCACTTGGATGCATTGAAACAGCAAGTAGCACGCGAGCCTAGGTCTTTCCCAACACTAAG 13858 Query 20673 CATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGG 20732 || | ||| | || | ||| | || || ||| ||| |||||||| || ||| Sbjct 13857 GATCAATCGTAAAATTGACTCTATAGATGACTTCAAATTTGAAGATTTTGTATTGGAAAA 13798 Query 20733 TTATAATCCCCATAATTCAATTCCAATGGAAATGTCTGTTTA 20774 ||||||||| | | |||| ||| ||||||||||||| Sbjct 13797 TTATAATCCTCTCAGCAAAATTGACATGAAAATGTCTGTTTA 13756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399161786158870