Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3946 199 4e-46 >seq3946 Length=52427 Score = 199 bits (220), Expect = 4e-46 Identities = 307/435 (71%), Gaps = 6/435 (1%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| ||| ||| | |||||||| ||||| || || |||| |||||| || | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| ||||| ||||| |||| |||| | | |||||| | || || | | | | Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCATAAG 26150 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 | ||| |||| ||| ||||| |||||| |||| ||| | |||||||||| || | | Sbjct 26151 ACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGC 26210 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | | || |||||| ||||||| ||| || ||||| || |||||||| Sbjct 26211 AACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATATC 26270 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAA 14211 | | | | || || | ||| | ||| || || |||| | | ||| || || Sbjct 26271 CTTCACACGTTG-TTGGCT--AGGTTGTTTACGAATATGAGTAAACAAAAGACAAGCGAA 26327 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 ||| |||||| || || || | || ||| | ||| || ||| || || || ||||| Sbjct 26328 ATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCAT 26387 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 ||| || ||||| || | |||||| || | ||| ||||| |||||||||||||| || || Sbjct 26388 CAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTTC 26447 Query 14332 AACTGCAGCAAACGC 14346 ||||||||||| || Sbjct 26448 TACTGCAGCAAAAGC 26462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 177/260 (68%), Gaps = 13/260 (5%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || || |||||||| | | || || |||| ||||| || ||||| || || ||| Sbjct 26645 ATATAGGTATCAATCAAAAGACTGTATGTTTCTGAGTGAATATTTTCAATCATGATTTGA 26704 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593 || |||||||||||| ||||||| | || || || |||| ||| ||||| Sbjct 26705 AAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAGTTTTGCACCAAA 26764 Query 14594 TTTTCATTAACTATACCATCACTAGCT-GCAAAAAATGCCAATATGTTTTTAATAAAGTA 14652 |||||||| || ||||||||| |||| ||||| || ||||| | | |||||| | Sbjct 26765 TTTTCATTTACAATACCATCA-GAGCTGGCAAAGAAAGCCAAAACGCGAGAAATAAAAAA 26823 Query 14653 TTGCTCTTCATTGCTGAGT-------TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTA 14705 | || ||||| || ||| |||| |||||| | ||| || | ||||| Sbjct 26824 TCGC---TCATT-CTCAGTCATTTTGTTTTCCCAATCATTTTGATCTCTACTTAAATCTA 26879 Query 14706 CTTCATCAACTGTCCAAAAA 14725 ||| ||| ||||||||||| Sbjct 26880 TTTCTTCAGCTGTCCAAAAA 26899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482318070124880