Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4556 149 1e-30 seq3946 129 1e-24 >seq4556 Length=51470 Score = 149 bits (164), Expect = 1e-30 Identities = 304/448 (68%), Gaps = 13/448 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| || || ||||| ||||||||| ||| ||||||| ||||| || ||| Sbjct 10017 GTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCTGGCTCATTCGCCTCCATCTTTTGG 9958 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | ||| | |||| ||| | |||| ||||| || || | | | || Sbjct 9957 TTAAAGAAACGTGGTTTGATGCCCGGTTTGACCTTTAGTAATGAATTGATCTGTCGTGAT 9898 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 ||||||||||| |||||||| || | |||| | | | || | | |||| Sbjct 9897 GAAGGTCTTCACACTGACTTTGCCTGTCTCTTGTTCACCCACA--TCCGTAAACAACCCA 9840 Query 102098 -TCAAGAGAAAGGATTCTTGAA----ATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 |||| | | | || | | ||||| ||||||||| | || |||||||||| Sbjct 9839 GTCAACA---ACGCGTCAAGGACATCATTGTA---GAAGCCGTCGGTATCGAACAAGAAT 9786 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | || | | | | ||||||||| ||| | || |||||| | |||||| | |||| Sbjct 9785 TCCTGTCGGATGCTCTGCCTGTTGCATTGATCGGTATGAACGCTACCTTGATGTGTCAGT 9726 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272 | || ||||| || || ||| || |||| | | ||| | || ||| || |||| Sbjct 9725 ATATCGAATTCGTCGCTGATCGTCTCATGGTCGCTCTTGGATTCGACAAGATTTACAATG 9666 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 ||| ||||| ||| || ||||||| || ||||| | |||||||||||||||| Sbjct 9665 CTACTAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGCAAGACCAACTTTTTTG 9606 Query 102333 AAAAGAGAGTCGCCGAGTATCAACGTGC 102360 ||||| | || | || ||||||||||| Sbjct 9605 AAAAGCGTGTTTCTGATTATCAACGTGC 9578 >seq3946 Length=52427 Score = 129 bits (142), Expect = 1e-24 Identities = 299/446 (67%), Gaps = 5/446 (1%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 ||||||| ||||||||||| ||||| || |||||| || |||| || || ||||| | Sbjct 26467 TTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCCGGCTCATTTGCTTCTATTTTTT 26408 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | ||| | |||| ||| | || | ||||| || |||| | | | Sbjct 26407 GGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAATGAATTGATTTGTCGTG 26348 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 |||||||||||||| ||| || || || | |||| | | || || | | || Sbjct 26347 ACGAAGGTCTTCATACCGATTTCGCTTGTCTTTTGTTTACTCA--TATTCGTAAACAACC 26290 Query 102096 CATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 | | | | || | | || ||| | | ||||| || | |||||||||||||| Sbjct 26289 TAGCCA-ACAACGTGTGAAGGATATTATAATGGAAGCTGTAGGCATTGAACAAGAATTCT 26231 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 | || | | | | |||||| ||| | || ||||| | | |||||| | || |||| Sbjct 26230 TAACCGATGCATTACCTGTTGCATTGATTGGTATGAATTCTACTTTGATGTGTCAATACA 26171 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 ||||||| || || ||| || |||||| | || | || || |||| | | Sbjct 26170 TTGAATTCGTTGCTGATCGTCTTATGGTTGCTCTTGGGTTCGATAAAATTTATATGGCAA 26111 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCT-CGAGAATAAGACCAACTTTTTTGAA 102334 | || || || || ||||| | ||||| || | || | |||||||||||||||||| Sbjct 26110 CGAATCCGTTTGACTTTATGGATATGATTTCACTGCAAGGA-AAGACCAACTTTTTTGAA 26052 Query 102335 AAGAGAGTCGCCGAGTATCAACGTGC 102360 ||| | || | || ||||||||||| Sbjct 26051 AAGCGCGTTTCTGATTATCAACGTGC 26026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989526107480530