Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2389 183 3e-41 seq3946 136 4e-27 seq4556 113 4e-20 >seq2389 Length=30206 Score = 183 bits (202), Expect = 3e-41 Identities = 534/820 (65%), Gaps = 2/820 (0%) Strand=Plus/Plus Query 37695 AATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754 |||||| | | ||||| |||||||||||||| | || ||| | ||| || || Sbjct 12418 AATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGACTTGTATATTCGACAATTTCCGT 12477 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 ||| || ||||| || |||| || ||||| || |||||| ||| ||||||||| Sbjct 12478 ACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGCTGATTGCTCTTTCTATTACAAGC 12537 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 ||| || || || ||| | || | || ||| |||| || || | |||| | ||| Sbjct 12538 ATCCTTGTAGAGCATAAATGGATTACCGGTTTCAGTTTGTGCTTCCAAGATAGCATACCA 12597 Query 37875 TAAACTTCTTGCTTTAACGATCGCTTTAAtttttttCTTTGT-TTCGTATTCTATATATA 37933 ||| || ||| |||| || || | | || ||| | ||| || | ||| | Sbjct 12598 TAACTTTTGTGCCTTAATTGTCTCTCTCGCTCTTC-CTTCGCGTTCATAGCTTTCATAAA 12656 Query 37934 ATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTA 37993 ||| |||| ||||| ||||| || || || ||| ||||| | | Sbjct 12657 GAGCCACAAACTCATCACCCCAAACATCTTGCAAACCAGGTGCTTCATTAGGACAAAAGA 12716 Query 37994 GAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAG 38053 ||||||| ||| || | | | || |||| ||| || | ||| |||||||| | ||| Sbjct 12717 GAGACCAATCTCCACCGTCCTTGACACGTTGCATGAAGAGATCGGGTACCCAAAGGGCAT 12776 Query 38054 TAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAAT 38113 ||| ||||| || ||| ||| || || || | ||||||||||| || ||| Sbjct 12777 AAAACAAATCACGGGCTCTGATTTCATCCTTACCAAAGTTCTTTCTTAAATCTAAAAAGG 12836 Query 38114 CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCAC 38173 || |||||||| |||||||| || | ||| || | | |||||||| | || | | Sbjct 12837 TAAAGATATCAGCATGCCATGGCTCGAGATACATGGCAAAGGCTCCTGGACGCTTGTTGC 12896 Query 38174 CTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCAT 38233 | || |||| | ||| | |||||||||| ||| | ||||| || | | ||| | Sbjct 12897 CGCCTTGATCGACATAACGTGCTGTGTTATTGAATACACGCAACATGGGAAGCAAACCGT 12956 Query 38234 TAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACA 38293 | || | || ||| |||||| ||||| | || || || || |||||| || | Sbjct 12957 TCGAATAACCATTTGTACCGGCAATATAGGATCCATTGGCACGAATATTATGAATGTTGA 13016 Query 38294 ATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATAC 38353 || || ||||||||| ||| || ||| || || |||||| || ||| | || | Sbjct 13017 GACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTTAATGTTTCATAGATGC 13076 Query 38354 CTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAG 38413 |||| || || ||||| || | || | || ||| ||||| ||||| || | Sbjct 13077 CTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGACATCTGAGGACGAGGTG 13136 Query 38414 TTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTAT 38473 | ||||| || || || |||||| ||||| | || |||| || |||| | || | Sbjct 13137 TACCGGCATTGAACAAAGTAGGACTGGCATGAGTAAAGAATTTCTCGGACATCAAGTTGT 13196 Query 38474 ATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 | || || ||| || | || ||||| | ||||| ||||| Sbjct 13197 AAGTCTCGATTGCAGCGTCAATATCTTCACCGTGGATACC 13236 >seq3946 Length=52427 Score = 136 bits (150), Expect = 4e-27 Identities = 300/439 (68%), Gaps = 8/439 (2%) Strand=Plus/Plus Query 11341 TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATAT-ATACT 11399 |||||| ||| ||| || ||| ||||| || ||||| |||| ||||| || ||| | Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATA-T 26089 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||||||| ||| ||||| | | | | | ||| || |||| || ||| Sbjct 26090 CCATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCG-AACCCAAGAGCAACCATA 26148 Query 11460 AT-CTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 | | ||| || |||||||| || || ||| |||| ||| | |||||||||| || | Sbjct 26149 AGACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAAT 26208 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | || || | ||| | || || || || | ||| || || || || || || || Sbjct 26209 GCAACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATA 26268 Query 11579 GACGTTATAACTTCCTTAGAT-GGTGGATGTAATAA-ATGTTTAAACATTAAACACGCAA 11636 | | | | || || | | ||| | | || || ||| |||||| | ||| || | Sbjct 26269 TCCTTCACACGTTG-TTGGCTAGGTTGTT-TACGAATATGAGTAAACAAAAGACAAGCGA 26326 Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 |||| ||| | ||||||||| | || || | ||||||| ||| || || ||||||| Sbjct 26327 AATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCA 26386 Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756 |||| || ||||| || | |||||| |||| ||||||||| || ||||||||||| || | Sbjct 26387 TCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTT 26446 Query 11757 CCACAGCTGCAAATGCTAC 11775 | || || ||||| || || Sbjct 26447 CTACTGCAGCAAAAGCAAC 26465 Score = 120 bits (132), Expect = 3e-22 Identities = 232/338 (69%), Gaps = 11/338 (3%) Strand=Plus/Plus Query 11850 TTGTTTCTATAGCGTTAAATAAATGCATTT---TTTCTATATTATCTCTTACATATGTAT 11906 |||| || ||||| | | ||| |||||| ||||| || |||| ||| ||| |||| Sbjct 26598 TTGTATCAATAGC---AGAGAAAAGCATTTCTTTTTCTTCATCATCTTTTATATAGGTAT 26654 Query 11907 CTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGA 11966 | || || | ||| || ||||||| ||||||||||| || |||||||| ||||| | Sbjct 26655 CAATCAAAAGACTGTATGTTTCTGAGTGAATATTTTCAATCATGATTTGAAAGCCATAAA 26714 Query 11967 AACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTA 12026 ||||| || || | | | || || || |||| ||| | | ||||| ||||||| Sbjct 26715 AACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAGTTTTGCACCAAATTTTCATTTA 26774 Query 12027 CAATACCATCACTAGAT-GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCT 12085 ||||||||||| || | ||||| || || | | | ||||| || || | Sbjct 26775 CAATACCATCA-GAGCTGGCAAAGAAAGCCAAAACGCGAGAAATAAAAAATCGCTCATTC 26833 Query 12086 TTAGTTAAT---TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTC 12142 | ||| | | || |||||||||| | |||| | |||||||| ||||||| | ||| Sbjct 26834 TCAGTCATTTTGTTTTCCCAATCATTTTGATCTCTACTTAAATCTATTTCTTCAGCTGTC 26893 Query 12143 CAAAAACTTGCCACTGATTGTTTATACATTTTCCAGAT 12180 |||||| ||| ||| | ||||| | || ||| || Sbjct 26894 CAAAAAGATGCTTCTGCCTTCTTATAGAATTGCCAAAT 26931 >seq4556 Length=51470 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| | ||| ||||| ||| || | |||||| || | || || | ||||||| | Sbjct 9863 AACAAGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTA 9922 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || || ||||||||||| || ||||| |||| |||||| || | || ||||| ||| Sbjct 9923 AAGGTCAAACCGGGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCA 9982 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG 11800 |||||||| || || || ||||| ||||| || || | | ||| || | | |||| Sbjct 9983 GAAAAGAAGATGCCTTCGACAGCGGCAAAGGCGACCAGACGTTCAGCAAAGGATTCGTTG 10042 Query 11801 CTAGATATCCATTTTCTGGCCCAATCAGCTTT 11832 || |||||||| ||||||||| || || Sbjct 10043 GATGAGATCCATTTGAAGGCCCAATCTGCCTT 10074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468498058947040