Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1352 116 4e-21 seq2614 114 1e-20 seq2841 109 5e-19 seq2600 100 3e-16 seq3863 89.7 5e-13 seq2553 84.2 2e-11 >seq1352 Length=65141 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | ||||| || ||||||||||| || || Sbjct 16208 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCTGAA 16267 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| ||||||||| |||||| |||||| ||||| ||||| Sbjct 16268 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAAACGTTGTTGATCAGGAGGG 16327 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||||| || | | ||| | | || | || || ||| Sbjct 16328 ATACCTTCCTTGTCTTGGATTTTTTGCTTGACGTTTTCGATGCTATCAGAGGATTCGACC 16387 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | ||||| || || |||||||| Sbjct 16388 TCCAAAGTGATGGTCTTGCCAGTAAGTGTTTTAACAAAGATTTGCAT 16434 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | || || || ||||| ||||| || || ||| Sbjct 15524 CCACCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTC 15583 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||||||||||| | || |||||||||||||| ||||| Sbjct 15584 AAAGTGCGACCGTCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGA 15643 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || || ||||| || | | || | | || | | ||| || Sbjct 15644 ATGCCCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACT 15703 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || ||||| ||||||||| Sbjct 15704 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCATA 15751 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | || || || ||||| ||||| || || ||| Sbjct 15980 CCACCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTC 16039 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||||||||||| | || |||||||||||||| ||||| Sbjct 16040 AAAGTGCGACCGTCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGA 16099 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || || ||||| || | | || | | || | | ||| || Sbjct 16100 ATGCCCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACT 16159 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || ||||| ||||||||| Sbjct 16160 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCATA 16207 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | ||||| || |||||||||||||| || Sbjct 15296 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAA 15355 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| ||||||||| |||||| ||| || ||||| ||||| Sbjct 15356 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 15415 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| || ||||| || | | || | | || | | ||| || Sbjct 15416 ATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACT 15475 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| || || || || ||||||||| Sbjct 15476 TCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCATA 15523 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | ||||| || |||||||||||||| || Sbjct 15752 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAA 15811 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| ||||||||| |||||| ||| || ||||| ||||| Sbjct 15812 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 15871 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| || ||||| || | | || | | || | | ||| || Sbjct 15872 ATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACT 15931 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| || || || || ||||||||| Sbjct 15932 TCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCATA 15979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || || || |||||||| || || || ||| Sbjct 15068 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTC 15127 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | |||||||||||| |||||| ||| || ||||| ||||| Sbjct 15128 AAAGTACGACCGTCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 15187 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || || ||||| || | | || | | || | | ||| || Sbjct 15188 ATTCCCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACT 15247 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | || || ||||| ||||||||| Sbjct 15248 TCCAAAGTAATGGTCTTACCAGTGAGAGTCTTGACGAAAATTTGCATA 15295 >seq2614 Length=127402 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| ||||| | || || || ||||||||||| ||||| ||| Sbjct 59183 CCGCCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCACTC 59124 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||| ||||||||| |||||| |||||||||||| ||||| Sbjct 59123 AAAGTACGACCATCTTCGAGCTGCTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGA 59064 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| || ||||| || | | || | | || | | || || Sbjct 59063 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTCTCAATACTATCAGAAGATTCGACT 59004 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || || || | ||||| ||||| || |||||| Sbjct 59003 TCCAAGGTAATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCATA 58956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/242 (69%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | || || || ||||||||||| || || | Sbjct 58955 CCACCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTC--TG 58898 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | ||| |||||||| |||||||||||| | || |||||||| || || |||| Sbjct 58897 AAAGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAG 58838 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| ||| ||||| |||| | ||| | | || | | || | Sbjct 58837 GAATACCTTCCTTGTCTTGGATCTTTTGCTTTACATTTTCGATGCTATCAGAAGATTCGA 58778 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTTT 139775 | || | || | ||||| || || | || ||||| || |||||||| | |||| || Sbjct 58777 CTTCTAAAGTGATAGTCTTTCCTGTAAGGGTCTTTACAAAGATTTGCAT-GTTTATAATT 58719 Query 139776 TA 139777 || Sbjct 58718 TA 58717 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || ||||||| || || |||||||||||||| || || Sbjct 59411 CCGCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAA 59352 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| |||||| |||||| || || ||||| Sbjct 59351 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGAGGA 59292 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| || ||||| |||| | ||| | | || | | ||| || Sbjct 59291 ATCCCTTCCTTGTCTTGAATCTTTTGCTTTACATTTTCAATACTATCAGAAGACTCAACT 59232 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || | ||||| ||||| || |||||| Sbjct 59231 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCATA 59184 >seq2841 Length=27215 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| || || || |||| ||| || |||||||| || || ||||| || Sbjct 25432 CCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCACTT 25491 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| || |||||||||||| | || || | ||| |||||||| || Sbjct 25492 AATGTACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGG 25551 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| |||| | | || | || |||| || || || Sbjct 25552 ATACCTTCTTTATC-TTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAAC 25610 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| || | || || || || ||||||||| Sbjct 25611 TTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 25659 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 139543 TCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGT 139602 || |||||| || || || |||| ||| || |||||||| || || ||||| || | ||| Sbjct 25671 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25730 Query 139603 GCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCC 139662 | ||||| || |||||||||||| | || || | ||| |||||||| || || || Sbjct 25731 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 25790 Query 139663 TTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAA 139721 |||||| || ||| |||| |||| | | || | || |||| || || || || | Sbjct 25791 TTCTTTATC-TTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTA 25849 Query 139722 CGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | |||||||| || | || || || || ||||||||| Sbjct 25850 ATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 25893 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 139543 TCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGT 139602 || |||||| || || || |||| ||| || |||||||| || || ||||| || | ||| Sbjct 25905 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25964 Query 139603 GCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCC 139662 | ||||| || |||||||||||| | || || | ||| |||||||| || || || Sbjct 25965 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 26024 Query 139663 TTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAA 139721 |||||| || ||| |||| |||| | | || | || |||| || || || || | Sbjct 26025 TTCTTTATC-TTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTA 26083 Query 139722 CGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | |||||||| || | || || || || ||||||||| Sbjct 26084 ATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 26127 >seq2600 Length=207564 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| || || || || | || || || ||||| || ||||||||||| Sbjct 124522 CCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCGCTT 124463 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| || ||||| |||||| |||| || | ||| ||||| || || Sbjct 124462 AATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 124403 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| |||| | | || | || |||| | || || Sbjct 124402 ATACCTTCTTTGTC-TTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTCAAC 124344 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || ||||| || | || || || |||||||||||| Sbjct 124343 TTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCATA 124295 >seq3863 Length=144211 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| || ||||||||||| || || ||| Sbjct 119950 CCACCACGAAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCACTC 120009 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | |||||||| || | || |||||||| ||||| ||||| Sbjct 120010 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGA 120069 Query 139658 ATGCCTTCTTTGTC 139671 || ||||| ||||| Sbjct 120070 ATACCTTCCTTGTC 120083 >seq2553 Length=14598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || || || ||||||||||| || |||||| Sbjct 8221 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCGCTC 8162 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | |||||||| || | || |||||||| || || ||||| Sbjct 8161 AAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGGTCAGGAGGA 8102 Query 139658 ATGCCTTCTTTGTC 139671 || ||||| ||||| Sbjct 8101 ATACCTTCCTTGTC 8088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496035687147200