Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2389 374 1e-98 seq3946 188 1e-42 seq4556 120 4e-22 >seq2389 Length=30206 Score = 374 bits (414), Expect = 1e-98 Identities = 823/1226 (67%), Gaps = 12/1226 (1%) Strand=Plus/Plus Query 79597 ATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656 |||||||| || || || | ||| |||| |||||||| || || |||| | | Sbjct 12398 ATTACAAAAGTGGGTAAAGCAATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGACTT 12457 Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 | ||||| | ||||| || || ||||||||||| |||||||| || || ||||| ||| Sbjct 12458 GTATATTCGACAATTTCCGTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGCTGA 12517 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 || |||||| | ||||| |||||||| || || || || ||| |||| |||||| | || Sbjct 12518 TTGCTCTTTCTATTACAAGCATCCTTGTAGAGCATAAATGGATTACCGGTTTCAGTTTGT 12577 Query 79777 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACT-TGTATCTCTT--T 79833 | ||| | || || | ||| | | | ||||| ||| | || | | ||||| | Sbjct 12578 GCTTCCAAGATAGCATACCATAACTTTTGTGCCTTAATTGT---CTCTCTCGCTCTTCCT 12634 Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 || | ||| || | ||| | | ||||| || ||||||||||| | || ||| Sbjct 12635 TCGCGTTCATAGCTTTCATAAAGAGCCACAAACTCATCACCCCAAACATCTTGCAAACCA 12694 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 || ||| | |||||| | | ||||| |||||| | ||||| || |||| ||| ||| Sbjct 12695 GGTGCTTCATTAGGACAAAAGAGAGACCAATCTCCACCGTCCTTGACACGTTGCATGAAG 12754 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 ||||| || | |||||| || ||| | ||| | || ||| || || || || Sbjct 12755 AGATCGGGTACCCAAAGGGCATAAAACAAATCACGGGCTCTGATTTCATCCTTACCAAAG 12814 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 |||||| | | ||| | || | | ||||||| |||||| || || | || ||||| Sbjct 12815 TTCTTTCTTAAATCTAAAAAGGTAAAGATATCAGCATGCCATGGCTCGAGATACATGGCA 12874 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 | |||| || || ||||| || || ||||| | || | || |||||||| | || Sbjct 12875 AAGGCTCCTGGACGCTTGTTGCCGCCTTGATCGACATAACGTGCTGTGTTATTGAATACA 12934 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | |||||| |||| | ||| || || |||||| || |||| |||||| |||| || Sbjct 12935 CGCAACATGGGAAGCAAACCGTTCGAATAACCATTTGTACCGGCAATATAGGATCCATTG 12994 Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 |||||||||||| ||| ||||| || || ||||| |||| || ||| || || Sbjct 12995 GCACGAATATTATGAATGTTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAG 13054 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 |||||| || ||||||||||| || || ||| || ||||| | || | || || Sbjct 13055 ATTTTTAATGTTTCATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAA 13114 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||| || ||||| || || ||||| || || |||||| || || ||||| Sbjct 13115 GAGGACATCTGAGGACGAGGTGTACCGGCATTGAACAAAGTAGGACTGGCATGAGTAAAG 13174 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432 |||| || |||| | ||||| ||||| || || | || ||||| || | || || Sbjct 13175 AATTTCTCGGACATCAAGTTGTAAGTCTCGATTGCAGCGTCAATATCTTCACCG-TGGAT 13233 Query 80433 TCCTACCGCGACACGCAT--TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490 || | ||||||||||| ||| |||| ||||| | || || ||||| | || Sbjct 13234 ACCAATGGCGACACGCATGATAAGATGT--TGAGGACGCTCGGCGGTCTTGCCGTCAATC 13291 Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550 || | | || ||| ||| | ||| || || |||||| |||||||| || |||| Sbjct 13292 TTGAGTAGATAGGATCGTTCAAGAGTCTTGAATCCAAAAAAGTTGTATTTGAAATCTCTG 13351 Query 80551 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATA 80610 || |||||||| | ||||| || || | | | ||| || | ||| | Sbjct 13352 TCATAAATAATGGCTGAGTTCAGACGTTCTGCGTTGTCCTGAACAACCTTATAGGTTGTT 13411 Query 80611 CTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 80670 || || || || || || || | | || ||||| ||||||||| | | |||||| Sbjct 13412 TCGGATATCATGGGGGAGTGCTTGCTTGTCTTGGGATTCACATAGTTGTAGAGATCCTCA 13471 Query 80671 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCG 80730 ||||||| | ||||| || |||||||||||||||| ||| | || || | || Sbjct 13472 ATCACTTGAGAAAATACCTTCTTTGTTTCCTTGTGTAAATTACTAATTGCAATACGAGCA 13531 Query 80731 GCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 80790 || || | || || || ||||| | || || | || || |||| || || || Sbjct 13532 GCCAAGAGTGCGTAGTCGGGATGACGAGTGGTCATATATGCAGCGGTTTCAGCAGCAAGG 13591 Query 80791 GTGTCCAATTCTACCGTTGTTACTCC 80816 |||| | ||| || || |||||||| Sbjct 13592 TTGTCAAGTTCAACAGTAGTTACTCC 13617 Score = 203 bits (224), Expect = 5e-47 Identities = 532/797 (67%), Gaps = 15/797 (2%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| ||||| ||||| || | || ||| || ||||| |||||||| Sbjct 11482 GTACGCAAATAATACATACCCGTCTTCAATCCCTTTTGCCAACCATAGAAGTGCATACTT 11541 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || || || | | | || || || ||| ||| |||| | |||||||||||| ||| Sbjct 11542 GTCAGCTTACCAAAGTTGGGTTCAGCAATAAAGATGTTCAAACTTTGACTTTGATCAATG 11601 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 |||| || | ||| || ||||| | | || || ||| | ||||||||||| ||| Sbjct 11602 TAGGCGCCACGGTCAGCGGCCATATCAACAATTGTACGTTGAGAAATTTCCCAAACAGTC 11661 Query 78928 TTATAAA-CTCGCTTAATATCTTCTGGAAG-GTTTGTA--TTCTGAATGGATCCACCATC 78983 || || | ||| || | | || |||| || ||| || |||| ||||||||||| Sbjct 11662 TTGTAGAGCTCT-TTGAGGTGTTGAGGAATTGTGGGTACATTTTGAACAGATCCACCATC 11720 Query 78984 TGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAG 79043 ||||| ||| | ||||||| || || ||||| | | || ||| | | ||| Sbjct 11721 GGCCATGATCATGTTCTTGACTTCATCGTTCCAGATACCCATATCAACCAAATCACGAAG 11780 Query 79044 GAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACT 79103 | || || || | |||| |||| || || | || | || || |||| || Sbjct 11781 TAACCAAGGGTTGACCATTTGATATTCACCCGAGAGCACACGACGGGTATAAAAGTTGGA 11840 Query 79104 GGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCAT 79163 || || || || | | ||||| ||||| ||||||| || || || || ||||| Sbjct 11841 AGTGTAAGGCTCAAAGCACTCATTGAAACCCAACATTTGAGAGGTGGAAGCGGTAGGCAT 11900 Query 79164 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGAT 79221 ||| || | || | ||| | | || ||| | | || || || ||||| || Sbjct 11901 AGGGGCTAATAAGAGTGAATTGCGGACGCC--ATGCTTGGCTATCTTTTCCTTTAGTGAA 11958 Query 79222 TCCCAATCCCAAAGATCAGACGGGACA-ACATTCCAAAGATCATATTGTAGAATACCGTT 79280 |||| ||||||||| || |||| |||||||| | || ||||||| || || || Sbjct 11959 GCCCAGTCCCAAAGAG-AGGTGGGAGTCACATTCCACATGTCGTATTGTAATATGCCCTT 12017 Query 79281 AC-TAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAAC 79339 || | | | ||| || |||||||||||||| | |||||| || ||||| || Sbjct 12018 GGATACAGGACTACCCTCA-TAAGTTTCATAAGGTCCGTACTTTTCAGCCAATTCGCATG 12076 Query 79340 TCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 79399 || || || || ||| ||| |||||||| || || | |||| | | || |||| Sbjct 12077 AGGCTTCCAAGGCAGCGTGATAGATGGTTTCAAAGATTTGAATATTTAATTGTTTGGCTT 12136 Query 79400 CTAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCA 79458 | ||| | ||||| || ||| |||| || || | ||| ||||||||||| ||||| Sbjct 12137 C-AGGAGAGTCAAAGGGGTAACGTAAGGCCATGAATGTGTCGGCTAATCCTTGGACACCT 12195 Query 79459 ATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 79518 | ||||||||| | ||||||||| || || |||| ||||| | ||| ||||| || Sbjct 12196 AAACCGATAGGACGATGTCTCTTGTTTGATCTTTCTGCTTCAATGACAGGGTAATAGTTG 12255 Query 79519 ATATCTATAATTTTATT 79535 ||||| ||||| || || Sbjct 12256 ATATCGATAATCTTGTT 12272 >seq3946 Length=52427 Score = 188 bits (208), Expect = 1e-42 Identities = 308/444 (69%), Gaps = 0/444 (0%) Strand=Plus/Plus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 ||| || ||| || || ||||| ||||| || || ||||||| || ||| || | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 ||| || ||||||||||| || | |||||||||| | || || | || || | Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCATAAG 26150 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 | ||| || || ||||| || ||| ||||| | ||||||| || || | | Sbjct 26151 ACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGC 26210 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 49910 ||| || | || | || | ||||||||||||||| ||| || || |||||||| Sbjct 26211 AACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATATC 26270 Query 49911 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 49970 | || || || || ||| | | | ||| |||||| | ||| |||||||| Sbjct 26271 CTTCACACGTTGTTGGCTAGGTTGTTTACGAATATGAGTAAACAAAAGACAAGCGAAATC 26330 Query 49971 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 50030 | || ||||| ||||| | || ||| | ||| || ||| || | |||||||| | Sbjct 26331 GGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCATCAA 26390 Query 50031 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTAC 50090 ||||| || ||||||||||| || || |||||||| || |||||||| || |||||||| Sbjct 26391 ACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTTCTAC 26450 Query 50091 TGCGGCAAAGGCAACAAGTCTCTC 50114 ||| ||||| |||||||| | ||| Sbjct 26451 TGCAGCAAAAGCAACAAGACGCTC 26474 Score = 141 bits (156), Expect = 1e-28 Identities = 208/294 (71%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 50208 TTTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 50267 |||||| | | |||||| | ||| ||||| ||||||||||| || |||| || ||||| Sbjct 26626 TTTTTCTTCATCATCTTTTATATAGGTATCAATCAAAAGACTGTATGTTTCTGAGTGAAT 26685 Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 50327 |||||||| || ||||| || || |||||| |||| || | ||| | ||||| Sbjct 26686 ATTTTCAATCATGATTTGAAAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATC 26745 Query 50328 ACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387 |||||| || | ||||||||||| || || || ||| | ||||| || ||||| Sbjct 26746 ACAAAAGTTTTGCACCAAATTTTCATTTACAATACCATCAGAGCTGGCAAAGAAAGCCAA 26805 Query 50388 TACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT---CCAATCATTGATATC 50444 || | |||||| | || || || | ||| || ||||||||| ||| Sbjct 26806 AACGCGAGAAATAAAAAATCGCTCATTCTCAGTCATTTTGTTTTCCCAATCATTTTGATC 26865 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 | || || ||||| |||||| |||||||||| ||||| |||||||| ||||| Sbjct 26866 TCTACTTAAATCTATTTCTTCAGCTGTCCAAAAAGATGCTTCTGCCTTCTTATA 26919 >seq4556 Length=51470 Score = 120 bits (132), Expect = 4e-22 Identities = 294/442 (67%), Gaps = 8/442 (2%) Strand=Plus/Plus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 ||| || ||| ||||| ||||| ||||| || || || |||| | || || | || Sbjct 9583 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 9642 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 ||| || || || || || ||| |||| ||||| || | ||||| | | || | Sbjct 9643 CATAAAGTCGAATGGGTTAGTAGCATTGTAAATCTTGTCGAATCCAAGAGCGACCATGAG 9702 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 | ||| ||||| ||||| ||||| ||||| | ||||| || || | | Sbjct 9703 ACGATCAGCGACGAATTCGATATACTGACACATCAAGGTAGCGTTCATACCGATCAATGC 9762 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG-CATCTGTTATAAT-A 49908 ||| || ||||| | | || ||||||||||| ||||||| | || || ||| | Sbjct 9763 AACAGGCAGAGCATCCGACAGGAATTCTTGTTC----GATACCGACGGCTTCTACAATGA 9818 Query 49909 GATC--TAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 49966 || | ||| || || ||| ||| | | | || | |||| | ||| || | Sbjct 9819 TGTCCTTGACGCGTTGTTGACTGGGTTGTTTACGGATGTGGGTGAACAAGAGACAGGCAA 9878 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 | || ||| ||||| || || | || || | ||| || ||| || | ||||||| Sbjct 9879 AGTCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGGCA 9938 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | | ||||| || || | |||||| ||||| || ||||| |||||||||||||| |||| Sbjct 9939 TCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCCTT 9998 Query 50087 CTACTGCGGCAAAGGCAACAAG 50108 | || ||||||||||| || || Sbjct 9999 CGACAGCGGCAAAGGCGACCAG 10020 Score = 107 bits (118), Expect = 3e-18 Identities = 194/283 (69%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 50219 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 50278 ||||||||| || ||||| ||||| ||||| || |||| | ||||||||||||||| Sbjct 10180 TATCTTTAATGTAGGTATCAATCAAGAGACTGTAAGTTTCAGCATGAATGTTTTCAATCA 10239 Query 50279 CCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTT 50338 ||||| || || || |||||| | || |||| ||||| ||||| |||||| || Sbjct 10240 TGATCTGGAAACCATAAAAACATTTGGCTTCGGGAATCTTGACTTCATCACAAAAGTTTT 10299 Query 50339 CAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 50398 | || || |||||||| || || || | | ||||| || ||||| ||| | | Sbjct 10300 GTACCAAGTTCTCATTCACGATACCATCTGAGCCAGCAAAGAAGGCCAAGACACGAGAGA 10359 Query 50399 TAAAATGTTTTTCGTTGGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATAT 50455 |||| |||||| | | |||||| ||| |||| ||| || | | Sbjct 10360 TAAAGAAACGTTCGTTTTCAGACATTTTATTTTCCCAGTCATGCTGATCCTTGCTCAAGT 10419 Query 50456 CTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 | | ||||| | |||||||| || || |||||||||||||| Sbjct 10420 CAATCTCTTCTGCGGTCCAAAAGGAAGCTTCTGCCTTTTTATA 10462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718227804808240