Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3946 194 2e-44 >seq3946 Length=52427 Score = 194 bits (214), Expect = 2e-44 Identities = 307/437 (70%), Gaps = 10/437 (2%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| ||| ||| | |||||||| ||||| || || |||| |||||| || | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||| ||||| ||| |||| | | |||||| | || || | | | | Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCATAAG 26150 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | |||||||| || ||||| |||||| |||| ||| | |||||||||| || | | Sbjct 26151 ACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGC 26210 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | || |||||| ||||||| ||| || ||||| || |||||||| Sbjct 26211 AACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATATC 26270 Query 13823 TGTAATAATCTCATTAGAAGG--AGGATATTTTAGA---TGTTTAAAAATTAAACACGCA 13877 | | | | || | || ||| | ||| || || |||| | | ||| || Sbjct 26271 CTTCACA----CGTT-GTTGGCTAGGTTGTTTACGAATATGAGTAAACAAAAGACAAGCG 26325 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 ||||| |||||| || || || | || ||| | ||| || ||| || || || ||| Sbjct 26326 AAATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGC 26385 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 ||||| || ||||| || | |||||| || | ||||||||| |||||||||||||| || Sbjct 26386 ATCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCT 26445 Query 13998 TCAACTGCAGCAAACGC 14014 || ||||||||||| || Sbjct 26446 TCTACTGCAGCAAAAGC 26462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 177/260 (68%), Gaps = 13/260 (5%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 || || |||||||| | | || || |||| ||||| || ||||| || || ||| Sbjct 26645 ATATAGGTATCAATCAAAAGACTGTATGTTTCTGAGTGAATATTTTCAATCATGATTTGA 26704 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAA 14261 || |||||||| ||| ||||||| | || ||||| |||| ||| ||||| Sbjct 26705 AAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAGTTTTGCACCAAA 26764 Query 14262 TTTTCATTAACTATACCATCACTAGCT-GCAAAAAATGCCAATATGTTTTTAATAAAGTA 14320 |||||||| || ||||||||| |||| ||||| || ||||| | | |||||| | Sbjct 26765 TTTTCATTTACAATACCATCA-GAGCTGGCAAAGAAAGCCAAAACGCGAGAAATAAAAAA 26823 Query 14321 TTGCTC-------TTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTA 14373 | |||| ||||| ||| |||| |||||| | ||| || | ||||| Sbjct 26824 TCGCTCATTCTCAGTCATT-TTG---TTTTCCCAATCATTTTGATCTCTACTTAAATCTA 26879 Query 14374 CTTCATCAACTGTCCAAAAA 14393 ||| ||| ||||||||||| Sbjct 26880 TTTCTTCAGCTGTCCAAAAA 26899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479700619524400