Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3946 205 9e-48 >seq3946 Length=52427 Score = 205 bits (226), Expect = 9e-48 Identities = 323/457 (71%), Gaps = 8/457 (2%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| ||| ||| | |||||||||||||| || || |||| |||||| || | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || || ||||| |||| |||| | | |||||| | || || | || |||| Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGC-AACCATAA 26149 Query 13491 -TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 | |||||||| || ||||| |||||| |||| ||| | |||||||||| || | | Sbjct 26150 GACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATG 26209 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||||| | | || ||||| ||||||| ||| || ||||| || |||||||| Sbjct 26210 CAACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATAT 26269 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTT---TAGATGTTTAAAAATTAAACACGCAA 13666 ||| | | || || | ||| | ||| | ||| |||| | | ||| || | Sbjct 26270 CCTTCA-CACGTTGTTGG--CTAGGTTGTTTACGAATATGAGTAAACAAAAGACAAGCGA 26326 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 |||| |||||| || || || | || ||| | ||| || ||| || || || |||| Sbjct 26327 AATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCA 26386 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 |||| || ||||| || | |||||| || | ||| ||||| |||||||||||||| || | Sbjct 26387 TCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTT 26446 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 | ||||||||||| || | || || || |||| || Sbjct 26447 CTACTGCAGCAAAAGCAACAAGACGCTCAGCAAAGGA 26483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 177/260 (68%), Gaps = 13/260 (5%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || || |||||||| | | || || |||| ||||| || ||||| || || ||| Sbjct 26645 ATATAGGTATCAATCAAAAGACTGTATGTTTCTGAGTGAATATTTTCAATCATGATTTGA 26704 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 || |||||||||||| ||||||| | || || || |||| ||| |||| Sbjct 26705 AAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAGTTTTGCACCAAA 26764 Query 14050 TTTTCATTAACAATACCATCACTAGCT-GCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 |||||||| |||||||||||| |||| ||||| || ||||| | | |||||| | Sbjct 26765 TTTTCATTTACAATACCATCA-GAGCTGGCAAAGAAAGCCAAAACGCGAGAAATAAAAAA 26823 Query 14109 TTGCTC-------TTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTA 14161 | |||| ||||| ||| |||| |||||| | ||| || | ||||| Sbjct 26824 TCGCTCATTCTCAGTCATT-TTG---TTTTCCCAATCATTTTGATCTCTACTTAAATCTA 26879 Query 14162 CTTCATCAACTGTCCAAAAA 14181 ||| ||| ||||||||||| Sbjct 26880 TTTCTTCAGCTGTCCAAAAA 26899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478561484544240