Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2841 132 5e-26 seq2600 123 3e-23 seq1352 118 1e-21 seq2614 114 1e-20 >seq2841 Length=27215 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| || || ||||||| || |||||||||||||| |||||||| || Sbjct 25432 CCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCACTT 25491 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| ||||||||||||||| | || || | ||| |||||||| || Sbjct 25492 AATGTACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGG 25551 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | || | || || | || ||| ||| Sbjct 25552 ATACCTTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACT 25611 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| || | || || || || ||||||||| Sbjct 25612 TCTAATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 25659 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 142963 TCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGT 143022 || |||||| || || || |||| || |||||||||||||| |||||||| || | ||| Sbjct 25671 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25730 Query 143023 GCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCC 143082 | ||||| ||||||||||||||| | || || | ||| |||||||| || || || Sbjct 25731 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 25790 Query 143083 TTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAAC 143142 |||||| || |||||| ||| | | || | || || | || ||| ||||| | Sbjct 25791 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 25850 Query 143143 AGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | |||||||| || | || || || || ||||||||| Sbjct 25851 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 25893 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 142963 TCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGT 143022 || |||||| || || || |||| || |||||||||||||| |||||||| || | ||| Sbjct 25905 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25964 Query 143023 GCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCC 143082 | ||||| ||||||||||||||| | || || | ||| |||||||| || || || Sbjct 25965 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 26024 Query 143083 TTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAAC 143142 |||||| || |||||| ||| | | || | || || | || ||| ||||| | Sbjct 26025 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 26084 Query 143143 AGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | |||||||| || | || || || || ||||||||| Sbjct 26085 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 26127 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 142963 TCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGT 143022 || |||||| || || || |||| || |||||||||||||| |||||||| || | ||| Sbjct 26139 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 26198 Query 143023 GCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCC 143082 | ||||| ||||||||||||||| | || || | ||| |||||||| || || || Sbjct 26199 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 26258 Query 143083 TTCTTTGTC 143091 | ||| || Sbjct 26259 ATGTTTATC 26267 >seq2600 Length=207564 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| || || ||||| | ||| ||||| |||||||| || |||||||| Sbjct 124522 CCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCGCTT 124463 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| |||||||| |||||| |||| || | ||| ||||| || || Sbjct 124462 AATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 124403 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | || | || || | | ||| ||| Sbjct 124402 ATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTCAACT 124343 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| || | || || || |||||||||||| Sbjct 124342 TCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCATA 124295 >seq1352 Length=65141 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || || | || ||||| ||||| |||||||| || ||| Sbjct 15524 CCACCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTC 15583 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | |||||||||||| | || |||||||||||||| ||||| Sbjct 15584 AAAGTGCGACCGTCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGA 15643 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || ||| ||||| || | | || | | || | | || ||| Sbjct 15644 ATGCCCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACT 15703 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| || || ||||| ||||||||| Sbjct 15704 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCATA 15751 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || || | || ||||| ||||| |||||||| || ||| Sbjct 15980 CCACCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTC 16039 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | |||||||||||| | || |||||||||||||| ||||| Sbjct 16040 AAAGTGCGACCGTCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGA 16099 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || ||| ||||| || | | || | | || | | || ||| Sbjct 16100 ATGCCCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACT 16159 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| || || ||||| ||||||||| Sbjct 16160 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCATA 16207 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || ||||| ||||| || ||||| || ||| Sbjct 15068 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTC 15127 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| | ||||||||||||| |||||| ||| || ||||| ||||| Sbjct 15128 AAAGTACGACCGTCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 15187 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| ||||| || | | || | | || | | || ||| Sbjct 15188 ATTCCCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACT 15247 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || || | || || ||||| ||||||||| Sbjct 15248 TCCAAAGTAATGGTCTTACCAGTGAGAGTCTTGACGAAAATTTGCATA 15295 >seq2614 Length=127402 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || || | || ||||| ||||| ||||||||||| ||| Sbjct 59183 CCGCCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCACTC 59124 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||||| || ||||||||| |||||| |||||||||||| ||||| Sbjct 59123 AAAGTACGACCATCTTCGAGCTGCTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGA 59064 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| ||||| || | | || | | || | | ||| ||| Sbjct 59063 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTCTCAATACTATCAGAAGATTCGACT 59004 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || || || | ||||| ||||| || |||||| Sbjct 59003 TCCAAGGTAATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCATA 58956 Score = 107 bits (118), Expect = 2e-18 Identities = 171/242 (71%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || || | || ||||| ||||| |||||||| || | Sbjct 58955 CCACCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTC--TG 58898 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | ||| ||||||||||||||||||||| | || |||||||| || || |||| Sbjct 58897 AAAGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAG 58838 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| || ||||| |||| | ||| | | || | | ||| | Sbjct 58837 GAATACCTTCCTTGTCTTGGATCTTTTGCTTTACATTTTCGATGCTATCAGAAGATTCGA 58778 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 143195 |||| | ||| | ||||| || || | || ||||| || |||||||| | |||| || Sbjct 58777 CTTCTAAAGTGATAGTCTTTCCTGTAAGGGTCTTTACAAAGATTTGCAT-GTTTATAATT 58719 Query 143196 TA 143197 || Sbjct 58718 TA 58717 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || ||||||||||| |||||||| || Sbjct 59411 CCGCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAA 59352 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||||||||||||| |||||| |||||| || || ||||| Sbjct 59351 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGAGGA 59292 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| ||||| |||| | ||| | | || | | || ||| Sbjct 59291 ATCCCTTCCTTGTCTTGAATCTTTTGCTTTACATTTTCAATACTATCAGAAGACTCAACT 59232 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || | ||||| ||||| || |||||| Sbjct 59231 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCATA 59184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506985462153120