Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4556 118 2e-21 seq2418 111 2e-19 seq2429 98.7 1e-15 seq3946 89.7 8e-13 >seq4556 Length=51470 Score = 118 bits (130), Expect = 2e-21 Identities = 295/435 (68%), Gaps = 21/435 (5%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||||| || || ||||| || || |||||||||||||| || || || |||||||| Sbjct 10020 CTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCTGGCTCATTCGCCTCCATCTTT 9961 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | ||||| || || | |||||||| |||| ||||| || || || | ||| Sbjct 9960 TGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACCTTTAGTAATGAATTGATCTGTCGT 9901 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606 || || || || ||| |||||||||| ||| |||| || | | | ||| | Sbjct 9900 GATGAAGGTCTTCACACTGACTTTGCCTGTCTCTTGTT---CACCCACATCCGTAAACAA 9844 Query 125607 TGCAGATC--CAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 ||| || || || | |||| ||| ||||||| || ||||| | || |||| Sbjct 9843 CCCAG-TCAACAACG-CGTCAAGGACAT---CATTGTA---GAAGCCGTCGGTATCGAAC 9792 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGC-TAAT 125722 |||| || || | || | || || || ||| |||| || |||||| || | | | || Sbjct 9791 AAGAATTCCTGTCGGATGCTCTGCCTGT-TGCATTGATCGGTATGAAC-GCTACCTTGAT 9734 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG--AGTTGATTGGCCGCAAG 125780 ||| |||| || || || || || |||||||| || || | |||| | |||| Sbjct 9733 GTGTCAGTATATCGAATTCGTCGCTGATCGTCTCATGGTCGCTCTTGGATT--CGACAAG 9676 Query 125781 ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840 |||||||| || | || || || || || ||| || || || || | || |||||| Sbjct 9675 ATTTACAATGCTACTAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGCAAGACC 9616 Query 125841 AACTTTTTCGAGAAG 125855 |||||||| || ||| Sbjct 9615 AACTTTTTTGAAAAG 9601 Score = 102 bits (112), Expect = 1e-16 Identities = 224/333 (67%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| || | || |||||||| | || ||||||||||| | |||||| | || || Sbjct 10474 ATTTGGCAATTCTATAAAAAGGCAGAAGCTTCCTTTTGGACCGCAGAAGAGATTGACTTG 10415 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||| | | | || ||||| | | || |||||| || || ||||| || Sbjct 10414 AGCAAGGATCAGCATGACTGGGAAAATAAAATGTCTGAAAACGAACGTTTCTTTATCTCT 10355 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | |||||||||||||| ||||| ||||| ||||| || || || || | ||| | Sbjct 10354 CGTGTCTTGGCCTTCTTTGCTGGCTCAGATGGTATCGTGAATGAGAACTTGGT-ACAAAA 10296 Query 125199 -TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 || | | | || | | ||||| || | || ||||| || ||||| |||||||| Sbjct 10295 CTTTTGTGATGAAGTCAAGATTCCCGAAGCCAAATGTTTTTATGGTTTCCAGATCATGAT 10236 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317 ||| ||| | || | |||| ||| | ||||||| | |||||| ||| || Sbjct 10235 TGAAAACATTCATGCTGAAACTTACAGTCTCTTGATTGATACCTACATTAAAGATAACCA 10176 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | || | ||||||||| || ||||| || Sbjct 10175 AGAAAAGGAAATGCTCTTTTCTGCTATCGATAC 10143 >seq2418 Length=25572 Score = 111 bits (122), Expect = 2e-19 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122 ||| || ||||| || ||||| || || ||||||||||| |||| || ||||||| || Sbjct 14337 AGAAGGTGATCTTGGTCCAGTCTATGGGTTCCAGTGGAGACACTTTGGAGCCAAGTACGT 14278 Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 || || || || |||||| ||||| || ||||||| || ||| | | || || || Sbjct 14277 TGATTGTGATACTGACTATAGTGGTCAAGGCATTGATCAGTTACAGCAAGTGATAGATAC 14218 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 | || | |||||||||||||| | || | | | | ||||||||||||||| | Sbjct 14217 CATTAAAAATAATCCAACAGATAGACGAATTATTCTCTCTGCTTGGAATCCTGCAGATAT 14158 Query 70243 GCACCAAATGGCACTACCACCGTGTCA--CTGTTTGGCTCAGTTTTA 70287 | |||||| |||| || ||||| || |||| ||||||||| Sbjct 14157 TCCTATAATGGCTTTACCTCCTTGTCATGCTTTTTG--TCAGTTTTA 14113 >seq2429 Length=29321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAG-ACGCTGATCGATATGGCTGCCGACAGAGG 98098 ||||||||||| ||||| ||| || | ||| || | || |||||||| || ||| | || Sbjct 16745 TACAAGACTGTGTGGGAAATTTCG-CAAAGAACCATTATTGATATGGCGGCTGACCGTGG 16803 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 || ||| ||||| ||| ||||||| | || | | | |||||| || | | | | Sbjct 16804 TGCCTATATTGATCAGTCTCAATCGATGAACTTATTCACTGCCGAACCAAGTTTCGGAAA 16863 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 ||||||| || || || || || ||||| || || | |||||||||||||||||| | Sbjct 16864 GTTGACTTCTATGCATTTCTATGCTTGGAAGAAAGGATTAAAGACGGGCATGTACTATTT 16923 Query 98219 GAG 98221 ||| Sbjct 16924 GAG 16926 >seq3946 Length=52427 Score = 89.7 bits (98), Expect = 8e-13 Identities = 175/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| || | || || ||||| | || || |||||||| | ||||| | ||| | Sbjct 26931 ATTTGGCAATTCTATAAGAAGGCAGAAGCATCTTTTTGGACAGCTGAAGAAATAGATTTA 26872 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 | || | | |||||||| | ||||||| | ||||||| ||||| || Sbjct 26871 AGTAGAGATCAAAATGATTGGGAAAACAAAATGACTGAGAATGAGCGATTTTTTATTTCT 26812 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | ||||||| ||||||||| |||| ||||| || || || || ||| || || | Sbjct 26811 CGCGTTTTGGCTTTCTTTGCCAGCTCTGATGGTATTGTAAATGAAAATTTGGTGCAAAAC 26752 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | | | || | | ||||| || | || ||||| || || |||||||||||| Sbjct 26751 TTTTGTGATGAAGTCAAAATTCCTGAAGCTAAATGTTTTTATGGCTTTCAAATCATGATT 26692 Query 125259 GAGAACGTGCACTCGGAAA 125277 || || | ||||| |||| Sbjct 26691 GAAAATATTCACTCAGAAA 26673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741016904046160