Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2600 125 5e-24 seq2841 116 3e-21 seq1352 102 6e-17 seq2614 93.3 3e-14 >seq2600 Length=207564 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || | ||| |||||||| || || || ||||| |||||||||||| || Sbjct 124522 CCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCGCTT 124463 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| |||| || | |||||| || ||||| || | | ||| || || | || Sbjct 124462 AATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 124403 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||| ||| |||||| ||| || || ||| ||||| | | || || Sbjct 124402 ATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTCAACT 124343 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||| || || | |||||| |||||||||||||| Sbjct 124342 TCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCAT 124296 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| ||||||| ||| ||||| || || || |||||||||||||| || | Sbjct 124295 ACCACCTCGTAATCTTAGCACTAAATGAAGAGTTGATTCCTTTTGAATATTATAGTCACT 124236 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || ||||| || | ||||| || || |||| Sbjct 124235 GAGAGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATGAGACGTTGTTGATCAGGAGG 124176 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| ||| ||||| || || || | | | |||| | | || || Sbjct 124175 AATACCTTCCTTATCTTGAATCTTTTGCTTTACGTTATCGATACTATCAGAAGATTCAAC 124116 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 124115 TTCTAAAGTGATAGTTTTACCAGTAAGGGTCTTGACAAAAATTTGCAT 124068 >seq2841 Length=27215 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || | ||| |||||||| ||||| |||||||| ||||| ||||| || Sbjct 25432 CCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCACTT 25491 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| | || || | |||||| || ||||| || | | ||| || || | || Sbjct 25492 AATGTACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGG 25551 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||||| |||||| ||| || || ||| ||||| | | || || Sbjct 25552 ATACCTTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACT 25611 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || | |||||| ||||| |||||||| Sbjct 25612 TCTAATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 25658 Score = 107 bits (118), Expect = 1e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 43900 TCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG 43959 ||| || | ||| ||||| || ||||| |||||||| ||||| ||||| ||||| Sbjct 25671 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25730 Query 43960 ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACC 44019 ||| | || || | |||||| || ||||| || | | ||| || || | || | ||| Sbjct 25731 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 25790 Query 44020 TTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGAC 44079 |||||||||| |||||| ||| || || ||| ||||| | | || || || | Sbjct 25791 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 25850 Query 44080 CGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || || | |||||| ||||| |||||||| Sbjct 25851 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 25892 Score = 107 bits (118), Expect = 1e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 43900 TCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG 43959 ||| || | ||| ||||| || ||||| |||||||| ||||| ||||| ||||| Sbjct 25905 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25964 Query 43960 ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACC 44019 ||| | || || | |||||| || ||||| || | | ||| || || | || | ||| Sbjct 25965 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 26024 Query 44020 TTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGAC 44079 |||||||||| |||||| ||| || || ||| ||||| | | || || || | Sbjct 26025 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 26084 Query 44080 CGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || || | |||||| ||||| |||||||| Sbjct 26085 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 26126 >seq1352 Length=65141 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| || ||||||||||| || || | || ||| | || ||| Sbjct 15086 ACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTCAAAGTACGACCGTCTTCC 15145 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| ||||| || || || || |||| | || || |||||| | Sbjct 15146 AATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTCCCTCCTTATCTTGA 15205 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||||| ||||| | ||| |||| | | ||| || || | ||||| || ||| Sbjct 15206 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTAATGGTCTTA 15265 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| || || |||||||| Sbjct 15266 CCAGTGAGAGTCTTGACGAAAATTTGCAT 15294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| || ||||| || || || || | || || | || ||| Sbjct 15542 ACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACCGTCTTCC 15601 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || || | |||||||| || |||| | || || |||||| | Sbjct 15602 AATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCTTGA 15661 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||||| ||||| | ||| |||| | | ||| || || | || || || ||| Sbjct 15662 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTCTTA 15721 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || || |||||||| Sbjct 15722 CCAGTCAAAGTCTTGACGAAAATTTGCAT 15750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| || ||||| || || || || | || || | || ||| Sbjct 15998 ACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACCGTCTTCC 16057 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || || | |||||||| || |||| | || || |||||| | Sbjct 16058 AATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCTTGA 16117 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||||| ||||| | ||| |||| | | ||| || || | || || || ||| Sbjct 16118 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTCTTA 16177 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || || |||||||| Sbjct 16178 CCAGTCAAAGTCTTGACGAAAATTTGCAT 16206 >seq2614 Length=127402 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTC 43971 ||||| || || ||| ||||||||||| || || || | || | ||| |||| || Sbjct 59393 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTC-TGAAAGGGTACGGCCATCTTC 59335 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||||| || ||||| ||||| ||||| ||||| |||| | ||||| || ||| Sbjct 59334 TAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGAGGAATCCCTTCCTTGTCTTG 59275 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| ||||| || || | ||| | |||| | | ||| || || | || || ||||| Sbjct 59274 AATCTTTTGCTTTACATTTTCAATACTATCAGAAGACTCAACTTCTAAAGTGATGGTTTT 59215 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || | || || || || || ||||| Sbjct 59214 ACCAGTAAGGGTTTTGACGAAAATCTGCAT 59185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354757857291768