Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2600 127 2e-24 seq2841 109 5e-19 seq2614 89.7 4e-13 seq1352 84.2 2e-11 >seq2600 Length=207564 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 ||||| |||| ||| | || |||||||| ||||| ||||| |||||||| || |||||| Sbjct 124525 TTTCCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCG 124466 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | | || | |||||| | ||||||||| ||| | ||||| || |||||||| Sbjct 124465 CTTAATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGT 124406 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||||||||| |||||| |||||| | ||| | |||| || ||| Sbjct 124405 GGAATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTCA 124346 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || || |||||||| || | || |||||||| |||||||| Sbjct 124345 ACTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCAT 124296 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||||||| || | ||| ||||| || || ||||| ||||| || || || || | Sbjct 124294 CCACCTCGTAATCTTAGCACTAAATGAAGAGTTGATTCCTTTTGAATATTATAGTCACTG 124235 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| ||||||||||| ||| | || || | |||||||| || Sbjct 124234 AGAGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATGAGACGTTGTTGATCAGGAGGA 124175 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||| ||||| || || | | | | ||| || ||| | Sbjct 124174 ATACCTTCCTTATCTTGAATCTTTTGCTTTACGTTATCGATACTATCAGAAGATTCAACT 124115 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| || || | || ||||||||||||||||| Sbjct 124114 TCTAAAGTGATAGTTTTACCAGTAAGGGTCTTGACAAAAATTTGCAT 124068 >seq2841 Length=27215 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 ||||| |||| ||| | || |||||||| || || |||||||||||||| |||||||| Sbjct 25429 TTTCCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCA 25488 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | | || | ||||| | |||||| || ||| |||| || || ||||||||| Sbjct 25489 CTTAATGTACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGT 25548 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | |||||||| || |||||| |||||| | ||| | |||| | ||| Sbjct 25549 GGGATACCTTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCA 25608 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || || || ||||| || | || |||||||| |||||||| Sbjct 25609 ACTTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 25658 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || ||||| || || || |||||||||||||| |||||||| | | || | ||| Sbjct 25681 AATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGTACGACCCTCT 25740 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 || | |||||| || ||| |||| || || ||||||||| || | |||||||| || Sbjct 25741 TCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCT 25800 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| |||||| | ||| | |||| | ||| ||| | || || || Sbjct 25801 TGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAATGTGATTGTC 25860 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || | || |||||||| |||||||| Sbjct 25861 TTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 25892 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || ||||| || || || |||||||||||||| |||||||| | | || | ||| Sbjct 25915 AATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGTACGACCCTCT 25974 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 || | |||||| || ||| |||| || || ||||||||| || | |||||||| || Sbjct 25975 TCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCT 26034 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| |||||| | ||| | |||| | ||| ||| | || || || Sbjct 26035 TGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAATGTGATTGTC 26094 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || | || |||||||| |||||||| Sbjct 26095 TTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 26126 >seq2614 Length=127402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||| ||||| ||||||||||| | || ||| | |||||| Sbjct 59165 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCACTCAAAGTACGACCATCTTCG 59106 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | || || || ||| | || | | || ||||| || | ||||| ||||| | Sbjct 59105 AGCTGCTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGA 59046 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| | ||| || ||| ||||| |||||||||||| Sbjct 59045 ATCTTTTGCTTGACGTTCTCAATACTATCAGAAGATTCGACTTCCAAGGTAATGGTTTTA 58986 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | |||||||| ||||| ||||| Sbjct 58985 CCAGTAAGGGTTTTGACGAAAATCTGCAT 58957 >seq1352 Length=65141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||| ||||| |||||||| || | || ||| | |||||| Sbjct 15542 ACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACCGTCTTCC 15601 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || |||| || | || ||||| || | ||| || || || | Sbjct 15602 AATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCTTGA 15661 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| ||| || || ||||| || ||||| || Sbjct 15662 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTCTTA 15721 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || ||||| ||||||||||| Sbjct 15722 CCAGTCAAAGTCTTGACGAAAATTTGCAT 15750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||| ||||| |||||||| || | || ||| | |||||| Sbjct 15998 ACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACCGTCTTCC 16057 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || |||| || | || ||||| || | ||| || || || | Sbjct 16058 AATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCTTGA 16117 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| ||| || || ||||| || ||||| || Sbjct 16118 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTCTTA 16177 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || ||||| ||||||||||| Sbjct 16178 CCAGTCAAAGTCTTGACGAAAATTTGCAT 16206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419563850759046