Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2614 102 7e-17 seq1352 89.7 4e-13 >seq2614 Length=127402 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || ||| ||||||||||||||||||||| ||| || | || || Sbjct 59165 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCACTCAAAGTACGACCATCTTCG 59106 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||||||||| | | || ||||| |||||||| || | || ||||||||| | Sbjct 59105 AGCTGCTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGA 59046 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||||| | | || |||| | ||| || || | || ||||||||| Sbjct 59045 ATCTTTTGCTTGACGTTCTCAATACTATCAGAAGATTCGACTTCCAAGGTAATGGTTTTA 58986 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| || ||||||||||| Sbjct 58985 CCAGTAAGGGTTTTGACGAAAATCTGCAT 58957 >seq1352 Length=65141 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| ||||||||||| ||||| ||| ||| || |||| ||| Sbjct 15086 ACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTCAAAGTACGACCGTCTTCC 15145 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | || ||||| | | || |||||||| ||||| || | | ||||| || | Sbjct 15146 AATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTCCCTCCTTATCTTGA 15205 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||||| | | | ||| |||| | |||||| || | || ||||| ||| Sbjct 15206 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTAATGGTCTTA 15265 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || ||||| ||||| Sbjct 15266 CCAGTGAGAGTCTTGACGAAAATTTGCAT 15294 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||||| || || | || || || | || || ||||||||||| | | Sbjct 15332 TCCTTTTGAATGTTATAGTCTGA-AAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAA 15390 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || |||||||| ||||| || | | |||||||| ||| || ||||||| | Sbjct 15391 GATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATT 15450 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || |||| | |||||| || | || ||||||||||| || | ||| || || Sbjct 15451 CTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGAC 15510 Query 48715 AAAAATCTGCAT 48726 |||||| ||||| Sbjct 15511 AAAAATTTGCAT 15522 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||||| || || | || || || | || || ||||||||||| | | Sbjct 15788 TCCTTTTGAATGTTATAGTCTGA-AAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAA 15846 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || |||||||| ||||| || | | |||||||| ||| || ||||||| | Sbjct 15847 GATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATT 15906 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || |||| | |||||| || | || ||||||||||| || | ||| || || Sbjct 15907 CTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGAC 15966 Query 48715 AAAAATCTGCAT 48726 |||||| ||||| Sbjct 15967 AAAAATTTGCAT 15978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421227758160566