Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2710 214 3e-51 seq3105 208 1e-49 seq3625 197 2e-46 seq4487 181 2e-41 >seq2710 Length=94120 Score = 214 bits (236), Expect = 3e-51 Identities = 220/284 (77%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | | ||| |||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 61698 GCTAAGCGTCACAGAAAGAT-TCTTCGTGATAACATTCAAGGTATCACTAAGCCTGCTAT 61640 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 61639 TCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 61580 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| |||||| | ||||| | | ||| || | ||||||| | ||||| || Sbjct 61579 CCGTAATGTCTTGAAGGTTTTCCTTGAAAACGTCATTCGTGATGCTGTTACTTATACTGA 61520 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| |||| ||||| | || | ||||| Sbjct 61519 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTCGTTTATGCTCTCAAGAGACAAGG 61460 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTT-AATCTTCTAATCAAACT 16714 ||||| |||||||||| || ||| |||| ||||| |||||| Sbjct 61459 CCGTACCCTTTATGGTTTCGGTGGTTAAATCATCTAAACAAACT 61416 >seq3105 Length=181656 Score = 208 bits (230), Expect = 1e-49 Identities = 209/269 (78%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | |||| |||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 43394 GCTAAGCGTCACAGAAAGAT-TCTTCGTGATAACATTCAAGGTATCACTAAGCCTGCTAT 43452 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 43453 TCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 43512 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| |||||| | ||||| | | ||| || | ||||||| | ||||| || Sbjct 43513 CCGTAATGTCTTGAAGGTTTTCCTTGAAAACGTCATTCGTGATGCTGTTACTTATACTGA 43572 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| ||||| ||||| |||| ||||| | || | ||||| Sbjct 43573 ACACGCCAAGAGAAAGACTGTTACCTCTTTGGATGTCGTTTATGCTCTCAAGAGACAAGG 43632 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||||| |||||||||| || |||||| Sbjct 43633 CCGTACCCTTTATGGTTTCGGTGGTTAAT 43661 >seq3625 Length=93257 Score = 197 bits (218), Expect = 2e-46 Identities = 206/268 (77%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | | ||| |||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 78380 GCTAAGCGTCACAGAAAGAT-TCTTCGTGATAACATTCAAGGTATCACTAAGCCTGCTAT 78322 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 78321 TCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 78262 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| |||||| | ||||| | | ||| || | ||||||| | || || || Sbjct 78261 CCGTAATGTCTTGAAGGTTTTCCTTGAAAACGTCATTCGTGATGCTGTTACTTACACTGA 78202 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| ||||| ||||| |||| ||||| | || | ||||| Sbjct 78201 ACACGCCAAGAGAAAGACTGTTACCTCTTTGGATGTCGTTTATGCTCTTAAGAGACAAGG 78142 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | |||||||| || ||||| Sbjct 78141 CCGTACCCTCTATGGTTTCGGTGGTTAA 78114 >seq4487 Length=205917 Score = 181 bits (200), Expect = 2e-41 Identities = 206/274 (75%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | |||| |||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 102098 GCTAAGCGTCACAGAAAGAT-TCTTCGTGATAACATTCAAGGTATCACTAAGCCTGCTAT 102156 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 102157 TCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 102216 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| |||||| | ||||| | | ||| || | ||||||| | || || || Sbjct 102217 CCGTAATGTCTTGAAGGTTTTCCTTGAAAACGTCATTCGTGATGCTGTTACTTACACTGA 102276 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | || || || | || | ||||| Sbjct 102277 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTTTACGCTCTCAAGAGACAAGG 102336 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||||| | |||||||| || | ||| || || Sbjct 102337 CCGTACCCTCTATGGTTTCGGTGGATAAGCTGCT 102370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071025274238