Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3345 194 3e-44 seq3946 178 2e-39 seq4556 113 7e-20 >seq3345 Length=10527 Score = 194 bits (214), Expect = 3e-44 Identities = 368/533 (69%), Gaps = 8/533 (2%) Strand=Plus/Minus Query 193640 ACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCC 193699 |||| |||| ||||| ||| | | |||||| |||||| ||||| |||||||| ||| | Sbjct 4146 ACCTACTGAAATCTACAATTTAGCAGCTCAATCTCATGTCAAAGTGTCCTTTGACATGTC 4087 Query 193700 AGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTAT 193759 || |||||| | |||| |||||| | || || ||| | | | || || |||||| Sbjct 4086 CGAATATACTGGTGATGTCGATGCTCTCGGCACACTTCGTCTCTTGGACGCCATTCGTAC 4027 Query 193760 GTTGGGAATGGA--GAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT 193817 ||| | | | || || |||||| |||| || || || || ||||| || ||| Sbjct 4026 -TTGTGGTTTAACCGATCGA-GTTCGCTTCTACCAAGCCTCCACTTCTGAACTTTACGGT 3969 Query 193818 GGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 ||| | | || || | | ||||||||||| || |||| || |||||||| ||| Sbjct 3968 AAAGTTGTCGAAACACCTCAAAAGGAAACCACACCTTTCTATCCTCGTTCTCCTTACGGT 3909 Query 193878 GTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATG-GAT-TCC 193935 || || ||| | |||||||| ||||| | || |||||||| || || | ||| | Sbjct 3908 GTCGCCAAGCTCTATGGTTACTGGATTGTTGTCAACTATCGTGAATCGTACGAGATGTAT 3849 Query 193936 ACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAA 193995 || || || ||||| |||||||| || ||||| || | | ||| || ||||| | Sbjct 3848 AC-CT-GTAACGGTATCCTCTTCAACCATGAATCACCTCGTCGTGGTCGTACCTTTGTTA 3791 Query 193996 CTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATC 194055 |||| ||||| |||| | | || || | ||| | | ||| || | |||||| Sbjct 3790 CTCGCAAGATCACACGTGCTGTAGCTGATATCCATTTAGGACGTCAAGACTGTCTTTACT 3731 Query 194056 TTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGT 194115 | |||||| || |||| ||| | ||||||||||| || ||||||||||||| |||| Sbjct 3730 TGGGTAATATTGATGCCAAGCGTGATTGGGGACATGCTCGTGATTATGTTGAAGGCATGT 3671 Query 194116 GGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 || | ||| | || || || | || | || | ||| | |||||||||||| Sbjct 3670 GGCTCATGCTCCAGCAAGAAAAGCCTCAAGACTTTGTCTTGGCTACAGGTGAA 3618 >seq3946 Length=52427 Score = 178 bits (196), Expect = 2e-39 Identities = 378/558 (68%), Gaps = 10/558 (2%) Strand=Plus/Minus Query 193639 AACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC 193698 ||||| |||| | |||||||||| ||||||| |||||| |||||||||||||| ||| Sbjct 15738 AACCTACTGAAGTTTATAATCTTGCTGCTCAATCTCATGTCAAAGTTTCCTTTGACATGT 15679 Query 193699 CAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTA 193758 | || |||||| | | || |||||| | || || ||| | || | || || | |||| Sbjct 15678 CTGAATATACTGGTGACGTCGATGCTCTTGGTACACTTCGTTTATTAGATGCCATCCGTA 15619 Query 193759 TGTTGGGAATGGA-GAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT 193817 | || | | || || || || |||| || || |||||| ||||| || ||| Sbjct 15618 CTTGTGGTTTAGCTGACCGA-GTCCGTTTCTACCAAGCTTCTACCTCTGAACTTTACGGT 15560 Query 193818 GGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 || | | ||||| | | |||||||| || || |||| || |||||||||||| Sbjct 15559 AAGGTCGTGGAGACTCCTCAAAAGGAAACCACGCCCTTCTATCCTCGATCTCCTTATGGT 15500 Query 193878 GTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCAC 193937 || || || | ||||| || ||||||| || || |||||||| || | | | Sbjct 15499 GTTGCCAAACTCTATGGCTACTGGATCACTGTAAACTACCGTGAGTCCTACGATATGTAT 15440 Query 193938 GCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACT 193997 ||| | |||||| || ||||| |||||||| || | | ||| || |||||||| Sbjct 15439 GCTTGCAATGGTATCCTTTTCAACCACGAATCACCTCGTCGTGGTCGTACCTTTGTAACC 15380 Query 193998 CGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAG--AAGAT--TCTTTA 194053 ||||| ||||| | | | | | | || || |||| | | ||||| |||||| Sbjct 15379 CGTAAAATTACCCGTGCTGTGGCCGATAT-TCACTTGG---GCCGTCAAGATTGTCTTTA 15324 Query 194054 TCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGAT 194113 ||| ||||| || |||| || | ||||||||||| || || ||||| || | || Sbjct 15323 TCTGGGTAACATTGATGCCAAACGTGATTGGGGACATGCTCGTGACTATGTAGAGGGTAT 15264 Query 194114 GTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTA 194173 |||| | ||| | || || || | || | |||| || | || ||||||||| | Sbjct 15263 GTGGCTCATGCTTCAGCAAGAAAAGCCTCAAGATTTCGTCCTAGCCACAGGTGAAACACA 15204 Query 194174 TTCTGTTAGAGACTTTGT 194191 | |||| ||| ||||| Sbjct 15203 TACTGTAAGAAGTTTTGT 15186 >seq4556 Length=51470 Score = 113 bits (124), Expect = 7e-20 Identities = 349/532 (66%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 193641 CCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCA 193700 ||| |||| | || ||||| | ||||||| |||||| || ||||| ||||| ||| | Sbjct 5517 CCTACTGAAGTGTACAATCTCGCTGCTCAATCTCATGTCAAGGTTTCGTTTGACATGTCT 5576 Query 193701 GAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATG 193760 || ||||| |||| |||||| | || || ||| | || | || || | |||| Sbjct 5577 GAATATACAGGCGATGTCGATGCTCTTGGTACACTTCGTTTATTGGATGCCATCCGTACC 5636 Query 193761 TTGGGAATGGA-GAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT-- 193817 | || | | || || || || | || || || || ||| || || || ||| Sbjct 5637 TGTGGTTTAGCTGACCGA-GTCCGATTTTACCAAGCCTCGACCTCTGAGCTTTACGGTAA 5695 Query 193818 GGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 ||| || || || || | | || || ||||| || | || || |||||||||||| Sbjct 5696 GGTCGTCGAG--ACGCCTCAAAAGGAGACTACACCCTTCTACCCTCGTTCTCCTTATGGT 5753 Query 193878 GTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCAC 193937 || || || | |||||||| ||||| | || || || || || || | | | Sbjct 5754 GTGGCCAAACTCTATGGTTACTGGATTACGGTCAACTACCGAGAATCTTACGACATGTAT 5813 Query 193938 GCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACT 193997 || || |||||||| || || || ||||| || | | ||| || ||||| ||| Sbjct 5814 GCCTGTAACGGTATTCTGTTTAACCATGAATCACCCCGTCGTGGTCGTACCTTTGTCACT 5873 Query 193998 CGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGAT--TACAGAAGATTCTTTATC 194055 || ||||| || | | | || || | || || |||| | | |||| | ||||||| Sbjct 5874 CGAAAGATCACTCGTGCTGTAGCTGATAT-TCACTTGGGTCGTCAAGAATGT-CTTTATC 5931 Query 194056 TTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGT 194115 | ||||| || | || || | ||||||||||| || || ||||| || | |||| Sbjct 5932 TGGGTAACATTGACGCCAAACGTGATTGGGGACATGCTCGTGACTATGTGGAGGGTATGT 5991 Query 194116 GGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGA 194167 || | ||| | || || ||| | || | |||| ||| | ||||| || || Sbjct 5992 GGCTCATGCTTCAGCAAGATAAGCCTCAAGATTTTGTCTTGGCTACCGGAGA 6043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807509108786960