Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3946 159 4e-34 seq4556 149 7e-31 >seq3946 Length=52427 Score = 159 bits (176), Expect = 4e-34 Identities = 350/513 (68%), Gaps = 15/513 (3%) Strand=Plus/Plus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||||||| ||| | ||||| ||||| || |||||||||| || ||| || || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 21247 CATAAAATCAAATGGATT--TTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 |||||| ||||| ||||| || || ||||| ||||| | || || | | || Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAAT--TTTATCGAACCCAAGAGCA-ACCAT 26147 Query 21305 AAT-CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 || | ||| || || ||||| || ||||||||||| || | |||||||||| ||||| Sbjct 26148 AAGACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAA 26207 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 | ||||| | || | || || || || ||| || || ||||| | || || Sbjct 26208 TGCAACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAAT 26267 Query 21424 ATTTATTATCC-TAGATGTACTAGGGGGAT-AC-AATAATTGTTTAAACATCAAACATGC 21480 || | | | | | || ||||| | | || |||| || |||||| | ||| || Sbjct 26268 ATCCTTCACACGTTGTTGG-CTAGGTTGTTTACGAATA--TGAGTAAACAAAAGACAAGC 26324 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 ||||| ||| | |||||| || | || || ||||||||| ||| || |||||||| Sbjct 26325 GAAATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGG 26384 Query 21541 CATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCC 21600 ||| || || | || || | |||||| || || ||||||| || |||||||| || || Sbjct 26385 CATCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACC 26444 Query 21601 CTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCA 21660 || || |||||||| ||||| | || ||| | | || || ||| | | ||||| Sbjct 26445 TTCTACTGCAGCAAAAGCAACAAGACGCTCAGCAAA---GGAATCATTAGCAGAAATCCA 26501 Query 21661 TTTTTCTGCCCATTTTGCCTTTTCTTTAATACA 21693 ||| ||||| | ||||| |||||||| Sbjct 26502 TTTGAAAGCCCAGTCAGCCTTACGCTTAATACA 26534 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||| || |||| || || |||||||| ||| || ||||| || ||||||||| | || Sbjct 26665 ACTGTATGTTTCTGAGTGAATATTTTCAATCATGATTTGAAAGCCATAAAAACATTTAGC 26724 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | | || || || | |||| ||| |||| ||||||||||| || ||||| Sbjct 26725 TTCAGGAATTTTGACTTCATCACAAAAGTTTTGCACCAAATTTTCATTTACAATACCATC 26784 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT-- 21943 | | |||||| || ||||| | |||||| |||| || || || || | | Sbjct 26785 AGAGCTGGCAAAGAAAGCCAAAACGCGAGAAATAAAAAATCGCTCATTCTCAGTCATTTT 26844 Query 21944 -TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 |||| |||||| | |||| | |||||||| |||||||| ||||||||| Sbjct 26845 GTTTTCCCAATCATTTTGATCTCTACTTAAATCTATTTCTTCAGCTGTCCAAAA 26898 >seq4556 Length=51470 Score = 149 bits (164), Expect = 7e-31 Identities = 342/509 (67%), Gaps = 7/509 (1%) Strand=Plus/Plus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||||||| ||| | ||||| ||||| || ||||| |||| | || || || Sbjct 9583 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 9642 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306 |||||| || ||||| || || || | || || | | || || | || || | Sbjct 9643 CATAAAGTCGAATGGGTTAGTAGCATTGTAAATCTTGTCGAATCCAAGAGC-GACCATGA 9701 Query 21307 T-CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 | ||| || || ||||| ||||| |||||||| || | ||||||||||||||| Sbjct 9702 GACGATCAGCGACGAATTCGATATACTGACACATCAAGGTAGCGTTCATACCGATCAATG 9761 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 ||||| ||||| | | || || || ||| ||| ||||||||| ||||| || | Sbjct 9762 CAACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACGGCTTCTACAATGATGT 9821 Query 21426 TTATTATCC-TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAA 21484 | | | | | || ||| || | | | || | |||| | ||| ||||| Sbjct 9822 CCTTGACGCGTTGTTG-ACTGGGTTGTTTACGGATGTGGGTGAACAAGAGACAGGCAAAG 9880 Query 21485 TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATT 21544 ||| || | ||||||||| | || || ||||||||| ||| || ||||||||||| Sbjct 9881 TCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGGCATC 9940 Query 21545 AATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCA 21604 || || | || ||||||||||| || || || |||| || |||||||| ||||| || Sbjct 9941 AAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCCTTCG 10000 Query 21605 ACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTT 21664 || || ||||| || || | |||||| | | ||||| || | |||||||| Sbjct 10001 ACAGCGGCAAAGGCGACCAGACGTTCAGCAAA---GGATTCGTTGGATGAGATCCATTTG 10057 Query 21665 TCTGCCCATTTTGCCTTTTCTTTAATACA 21693 ||||| | |||||| |||||||| Sbjct 10058 AAGGCCCAATCTGCCTTACGCTTAATACA 10086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531870441761840