Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2389 383 2e-101 seq3946 192 7e-44 seq4556 122 1e-22 >seq2389 Length=30206 Score = 383 bits (424), Expect = 2e-101 Identities = 839/1249 (67%), Gaps = 12/1249 (1%) Strand=Plus/Plus Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 |||||||| || || |||| ||| |||| |||||||| || || |||| | | Sbjct 12398 ATTACAAAAGTGGGTAAAGCAATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGACTT 12457 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | ||||| | || || || ||||| |||||||| || || || || || ||||| ||| Sbjct 12458 GTATATTCGACAATTTCCGTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGCTGA 12517 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 || |||||| | ||||| |||||||| || || || |||||| |||| |||||| | || Sbjct 12518 TTGCTCTTTCTATTACAAGCATCCTTGTAGAGCATAAATGGATTACCGGTTTCAGTTTGT 12577 Query 63054 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT 63113 | ||| | || || | ||| | | | ||||| ||| | | | ||| | ||| Sbjct 12578 GCTTCCAAGATAGCATACCATAACTTTTGTGCCTTAATTGTCTCTCTCGCTCTTCCTTCG 12637 Query 63114 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 | ||| || | ||| | | ||||| || |||||||||| | ||| ||||| Sbjct 12638 CGTTCATAGCTTTCATAAAGAGCCACAAACTCATCACCCCAAACATCTTGCAAACCAGGT 12697 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 ||||| ||||| | | ||||| ||||| | ||||| || |||| ||| |||||| Sbjct 12698 GCTTCATTAGGACAAAAGAGAGACCAATCTCCACCGTCCTTGACACGTTGCATGAAGAGA 12757 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 || || | |||||| || ||| | ||| | || ||| ||| || || || ||| Sbjct 12758 TCGGGTACCCAAAGGGCATAAAACAAATCACGGGCTCTGATTTCATCCTTACCAAAGTTC 12817 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 ||| | | ||| | || | | ||||||| |||||| || || | || ||||| | Sbjct 12818 TTTCTTAAATCTAAAAAGGTAAAGATATCAGCATGCCATGGCTCGAGATACATGGCAAAG 12877 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 |||| || || ||||| || || ||||| | || | || |||||||| | || | | Sbjct 12878 GCTCCTGGACGCTTGTTGCCGCCTTGATCGACATAACGTGCTGTGTTATTGAATACACGC 12937 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 ||||| |||| | |||||| || |||||| ||||||| |||||| |||| ||||| Sbjct 12938 AACATGGGAAGCAAACCGTTCGAATAACCATTTGTACCGGCAATATAGGATCCATTGGCA 12997 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 ||||||||| ||| ||||| || || ||||| |||| || ||| || || | Sbjct 12998 CGAATATTATGAATGTTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGATT 13057 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| || |||||||| || || || ||| || ||||| | || | || || Sbjct 13058 TTTAATGTTTCATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAG 13117 Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653 ||||| || ||||| || || ||||| || || |||||| || || ||||| || Sbjct 13118 GACATCTGAGGACGAGGTGTACCGGCATTGAACAAAGTAGGACTGGCATGAGTAAAGAAT 13177 Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCC 63712 || || || | | ||||| ||||| || || | ||| ||||| || | || || || Sbjct 13178 TTCTCGGACATCAAGTTGTAAGTCTCGATTGCAGCGTCAATATCTTCACCG-TGGATACC 13236 Query 63713 TACTGCGACACGCAT--TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 | ||||||||||| ||| |||| ||||| | || || ||||| || || || Sbjct 13237 AATGGCGACACGCATGATAAGATGT--TGAGGACGCTCGGCGGTCTTGCCGTCAATCTTG 13294 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 | | |||||| ||| | ||| || || |||||| |||||||| || |||| || Sbjct 13295 AGTAGATAGGATCGTTCAAGAGTCTTGAATCCAAAAAAGTTGTATTTGAAATCTCTGTCA 13354 Query 63831 TAAATAATAACCGAGTTGA---GTTTATCCTTATATTTGTTAACTATATCCATGGTGATA 63887 |||||||| | ||||| | ||| | || | | ||| ||| | | || | Sbjct 13355 TAAATAATGGCTGAGTTCAGACGTTCTGCGTTGTCCTGAACAACCTTAT--AGGTTGTTT 13412 Query 63888 CTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 63947 | || || || || || || || | | || ||||| ||||||||| | | |||||| Sbjct 13413 C-GGATATCATGGGGGAGTGCTTGCTTGTCTTGGGATTCACATAGTTGTAGAGATCCTCA 13471 Query 63948 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCG 64007 ||||||| | ||||| || |||||||||||||||| ||| | || || | || Sbjct 13472 ATCACTTGAGAAAATACCTTCTTTGTTTCCTTGTGTAAATTACTAATTGCAATACGAGCA 13531 Query 64008 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 64067 || | | || || || ||||| | || || | || || |||| || || || Sbjct 13532 GCCAAGAGTGCGTAGTCGGGATGACGAGTGGTCATATATGCAGCGGTTTCAGCAGCAAGG 13591 Query 64068 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCT 64116 |||| | ||| || || |||||||| | || | || |||||||| Sbjct 13592 TTGTCAAGTTCAACAGTAGTTACTCCTTCGTAAACACCAGAAATAACCT 13640 Score = 168 bits (186), Expect = 8e-37 Identities = 534/821 (65%), Gaps = 19/821 (2%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| ||||| ||||| || | || ||| || || || |||||||| Sbjct 11482 GTACGCAAATAATACATACCCGTCTTCAATCCCTTTTGCCAACCATAGAAGTGCATACTT 11541 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || || || | | | || || || ||| ||| |||| | |||||||||||| ||| Sbjct 11542 GTCAGCTTACCAAAGTTGGGTTCAGCAATAAAGATGTTCAAACTTTGACTTTGATCAATG 11601 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 |||| || | ||| || ||||| | | || || ||| | ||||||||||| ||| Sbjct 11602 TAGGCGCCACGGTCAGCGGCCATATCAACAATTGTACGTTGAGAAATTTCCCAAACAGTC 11661 Query 62205 TTATAAA-CTCGCTTAATATCTTCTGGAAG-GTTTGTA--TTCTGAATGGATCCACCATC 62260 || || | ||| || | | || |||| || ||| || |||| ||||||||||| Sbjct 11662 TTGTAGAGCTCT-TTGAGGTGTTGAGGAATTGTGGGTACATTTTGAACAGATCCACCATC 11720 Query 62261 TGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAG 62320 ||||| ||| | ||||||| ||||| ||||| | | || ||| | | ||| Sbjct 11721 GGCCATGATCATGTTCTTGACTTCATCGTTCCAGATACCCATATCAACCAAATCACGAAG 11780 Query 62321 GAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACT 62380 | || || || | |||| |||| || || | || | || || |||| || Sbjct 11781 TAACCAAGGGTTGACCATTTGATATTCACCCGAGAGCACACGACGGGTATAAAAGTTGGA 11840 Query 62381 GGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 62440 || || || || | ||||||| ||||| ||||||| || || || || ||||| Sbjct 11841 AGTGTAAGGCTCAAAGCACTCATTGAAACCCAACATTTGAGAGGTGGAAGCGGTAGGCAT 11900 Query 62441 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGT 62498 ||| || | || | ||| | | || ||| | | || || || ||||| | Sbjct 11901 AGGGGCTAATAAGAGTGAATTGCGGACGCC--ATGCTTGGCTATCTTTTCCTTTAGTGAA 11958 Query 62499 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT- 62557 |||| | ||||||| | || || ||||| || || || Sbjct 11959 GCCCAGTCCCAAAGAGAGGTGGGAGTCACATTCCACATGTCGTATTGTAATATGCCCTTG 12018 Query 62558 ---ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACA 62614 || || ||| ||| |||| || || || ||||| | ||| ||||| | ||| || Sbjct 12019 GATACAGGACTAC---CCT-CATAAGTTTCATAAGGTCCGTACTTTTCAGCCAATTCGCA 12074 Query 62615 ACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC 62674 || || || ||| ||| ||| |||||||| ||||| | |||||| | || || Sbjct 12075 TGAGGCTTCCAAGGCAGCGTGATAGATGGTTTCAAAGATTTGAATATTTAATTGTTTGGC 12134 Query 62675 TTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACAC 62733 ||| ||| | ||||| || ||| |||| || || | ||| ||||||||||| |||| Sbjct 12135 TTC-AGGAGAGTCAAAGGGGTAACGTAAGGCCATGAATGTGTCGGCTAATCCTTGGACAC 12193 Query 62734 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 62793 | | ||||||||| | ||||||||| || || |||| ||||| | ||| ||||| | Sbjct 12194 CTAAACCGATAGGACGATGTCTCTTGTTTGATCTTTCTGCTTCAATGACAGGGTAATAGT 12253 Query 62794 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62834 | ||||| ||||| || || | ||||| ||| || ||| Sbjct 12254 TGATATCGATAATCTTGTTCAAGTTTCTAGTAATCACCTTG 12294 >seq3946 Length=52427 Score = 192 bits (212), Expect = 7e-44 Identities = 309/444 (70%), Gaps = 0/444 (0%) Strand=Plus/Plus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||| || ||| || || ||||| ||||| || || ||||||| || ||| || | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 ||| || ||||||||||| || | |||||||||| | || || | || || | Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCATAAG 26150 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 | ||| || |||||||| || ||| ||||| | ||||||| || || | | Sbjct 26151 ACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGC 26210 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 ||| || | || | || | ||||||||||||||| ||| || || |||||||| Sbjct 26211 AACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATATC 26270 Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 | || || || || ||| | | | ||| |||||| | ||| |||||||| Sbjct 26271 CTTCACACGTTGTTGGCTAGGTTGTTTACGAATATGAGTAAACAAAAGACAAGCGAAATC 26330 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 | || ||||| ||||| | || ||| | ||| || ||| || | |||||||| | Sbjct 26331 GGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCATCAA 26390 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 ||||| || ||||||||||| || ||||| ||||| || |||||||| || |||||||| Sbjct 26391 ACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTTCTAC 26450 Query 33435 TGCAGCAAAGGCAATAAGTCTCTC 33458 ||||||||| |||| ||| | ||| Sbjct 26451 TGCAGCAAAAGCAACAAGACGCTC 26474 Score = 150 bits (166), Expect = 2e-31 Identities = 210/294 (71%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 33552 TTTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 |||||| | | |||||| | ||| ||||| ||||||||||| || |||| || ||||| Sbjct 26626 TTTTTCTTCATCATCTTTTATATAGGTATCAATCAAAAGACTGTATGTTTCTGAGTGAAT 26685 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 |||||||| || ||||| || || |||||| |||| || | ||| | ||||| Sbjct 26686 ATTTTCAATCATGATTTGAAAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATC 26745 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 |||||| || | ||||||||||||| || || || ||| | ||||| || ||||| Sbjct 26746 ACAAAAGTTTTGCACCAAATTTTCATTTACAATACCATCAGAGCTGGCAAAGAAAGCCAA 26805 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT---CCAATCATTGATATC 33788 || | |||||| || || | || | ||| || ||||||||| ||| Sbjct 26806 AACGCGAGAAATAAAAAATCGCTCATTCTCAGTCATTTTGTTTTCCCAATCATTTTGATC 26865 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | || || ||||| |||||| |||||||||| ||||| |||||||| ||||| Sbjct 26866 TCTACTTAAATCTATTTCTTCAGCTGTCCAAAAAGATGCTTCTGCCTTCTTATA 26919 >seq4556 Length=51470 Score = 122 bits (134), Expect = 1e-22 Identities = 291/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Plus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||| || ||| ||||| ||||| ||||| || || || |||| | || || | || Sbjct 9583 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 9642 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 ||| || || || || || ||| |||| ||||| || | ||||| | | || | Sbjct 9643 CATAAAGTCGAATGGGTTAGTAGCATTGTAAATCTTGTCGAATCCAAGAGCGACCATGAG 9702 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 | ||| ||||||||||| ||||| ||||| | ||||| || || | | Sbjct 9703 ACGATCAGCGACGAATTCGATATACTGACACATCAAGGTAGCGTTCATACCGATCAATGC 9762 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG-CATCTGTTATAAT-A 33252 ||| || ||||| | | || ||||||||||| ||||||| | || || ||| | Sbjct 9763 AACAGGCAGAGCATCCGACAGGAATTCTTGTTC----GATACCGACGGCTTCTACAATGA 9818 Query 33253 GATC--TAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 || | ||| || || ||| ||| | | | || | |||| | ||| || | Sbjct 9819 TGTCCTTGACGCGTTGTTGACTGGGTTGTTTACGGATGTGGGTGAACAAGAGACAGGCAA 9878 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | || ||| ||||| || || | || || | ||| || ||| || | ||||||| Sbjct 9879 AGTCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGGCA 9938 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | | ||||| || || | |||||| ||||| |||||||| |||||||||||||| |||| Sbjct 9939 TCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCCTT 9998 Query 33431 CTACTGCAGCAAAGGC 33446 | || || |||||||| Sbjct 9999 CGACAGCGGCAAAGGC 10014 Score = 116 bits (128), Expect = 5e-21 Identities = 196/283 (69%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 33563 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 33622 ||||||||| || ||||| ||||| ||||| || |||| | ||||||||||||||| Sbjct 10180 TATCTTTAATGTAGGTATCAATCAAGAGACTGTAAGTTTCAGCATGAATGTTTTCAATCA 10239 Query 33623 CCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33682 ||||| || || || |||||| | || |||| ||||| ||||| |||||| || Sbjct 10240 TGATCTGGAAACCATAAAAACATTTGGCTTCGGGAATCTTGACTTCATCACAAAAGTTTT 10299 Query 33683 CCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33742 |||| || |||||||| || || || | | ||||| || ||||| ||| | | Sbjct 10300 GTACCAAGTTCTCATTCACGATACCATCTGAGCCAGCAAAGAAGGCCAAGACACGAGAGA 10359 Query 33743 TAAAATATTTTTCGTCTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATAT 33799 |||| | ||||| | | | |||||| ||| |||| ||| || | | Sbjct 10360 TAAAGAAACGTTCGTTTTCAGACATTTTATTTTCCCAGTCATGCTGATCCTTGCTCAAGT 10419 Query 33800 CTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | | ||||| | |||||||| || || |||||||||||||| Sbjct 10420 CAATCTCTTCTGCGGTCCAAAAGGAAGCTTCTGCCTTTTTATA 10462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622911645288560