Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2389 288 3e-72 seq3946 152 1e-31 seq4556 122 2e-22 >seq2389 Length=30206 Score = 288 bits (318), Expect = 3e-72 Identities = 596/879 (68%), Gaps = 10/879 (1%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || || || ||| | | |||||||| || ||||||||||| | ||| |||| Sbjct 13272 GAGCGTCCTCAACATCTTATCATGCGTGTCGCCATTGGTATCCACGGTGAAGATATTGAC 13213 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG--TATTCACGCACGCCACGCCAA 363565 || || || || || || || ||| | || | | | || || || |||| || | Sbjct 13212 GCTGCAATCGAGACTTACAA-CTTG-ATGTCCGAGAAATTCTTTACTCATGCCAGTCCTA 13155 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | ||| |||||| || || | | ||| |||||||| |||||||| | || | |||| Sbjct 13154 CTTTGTTCAATGCCGGTACACCTCGTCCTCAGATGTCCTCTTGCTTCTTGCTCACCATGA 13095 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT-TGTGCTCTTATTTCCAAG 363684 |||| ||||| || || || |||| ||| ||| |||| ||| ||||| | ||||| || Sbjct 13094 AGGAAGATTCAATTGAAGGCATCTATGAAACA-TTAAAAATCTGTGCCCAAATTTCGAAA 13036 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--GAACAGTTACATTC 363742 | |||||| || || ||| | || || ||| ||||||| | || | || ||| Sbjct 13035 ACTGCAGGTGGTATCGGTCTCAACATTCATAATATTCGTGCCAATGGATCC--TATATTG 12978 Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||| ||| || || ||||| || || |||||||| | ||||| || | || || | Sbjct 12977 CCGGTACAAATGGTTATTCGAACGGTTTGCTTCCCATGTTGCGTGTATTCAATAACACAG 12918 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 | | || ||||| || || || ||||| ||| || ||||| ||||||||||||| Sbjct 12917 CACGTTATGTCGATCAAGGCGGCAACAAGCGTCCAGGAGCCTTTGCCATGTATCTCGAGC 12858 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | ||||| ||||| ||| ||| | || | | || ||| || || || ||| Sbjct 12857 CATGGCATGCTGATATCTTTACCTTTTTAGATTTAAGAAAGAACTTTGGTAAGGATGAAA 12798 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 | | || |||||| |||| ||||| |||||||| | || | || ||| | || || Sbjct 12797 TCAGAGCCCGTGATTTGTTTTATGCCCTTTGGGTACCCGATCTCTTCATGCAACGTGTCA 12738 Query 363983 AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 ||| ||| ||||||| |||||||| || | ||| || ||| | ||||| | Sbjct 12737 AGGACGGTGGAGATTGGTCTCTCTTTTGTCCTAATGAAGCACCTGGTTTGCAAGATGTTT 12678 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 ||||||| || | ||| ||||| || |||| |||||| || |||| || | ||| Sbjct 12677 GGGGTGATGAGTTTGTGGCTCTTTATGAAAGCTATGAACGCGAAGGAAGAGCGAGAGAGA 12618 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 ||||| ||||| ||| |||||| ||| ||| |||| | || | ||| || || | | Sbjct 12617 CAATTAAGGCACAAAAGTTATGGTATGCTATCTTGGAAGCACAAACTGAAACCGGTAATC 12558 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 | | |||| | ||||| ||| | || || | ||| ||| ||||| || | ||||| | Sbjct 12557 CATTTATGCTCTACAAGGATGCTTGTAATAGAAAGAGCAATCAGCAAAACTTGGGTACCA 12498 Query 364223 TTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 || | || ||||| ||||| || ||| | ||||| || |||||| || ||| | Sbjct 12497 TTAAATGTAGTAACCTTTGTACGGAAATTGTCGAATATACAAGTCCCGATGAAGTTGCTG 12438 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA 364321 | |||||| | || || || || | || | ||||||| Sbjct 12437 TTTGTAACTTGGCTTCTATTGCTTTACCCACTTTTGTAA 12399 >seq3946 Length=52427 Score = 152 bits (168), Expect = 1e-31 Identities = 352/526 (67%), Gaps = 17/526 (3%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAAC---AATGAACGTTCATTCGCG 22488 |||||| |||||| || ||||| | |||||||| ||||| ||| || || Sbjct 26531 ATTAAGCGTAAGGCTGACTGGGCTTTCAAATGGATTTCTGCTAATGA---TTCCTTTGCT 26475 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || |||||| |||| ||||||| || ||||| || |||||||| || ||||| | | Sbjct 26474 GAGCGTCTTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCCGGCTCATTTGCTTCT 26415 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || |||||||| || ||||||| | ||||| ||| | || ||| ||||| || ||| Sbjct 26414 ATTTTTTGGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAATGAATTGATT 26355 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATT 22668 | || || || ||||||||||||||||| || ||| | | | | | |||| ||| Sbjct 26354 TGTCGTGACGAAGGTCTTCATACCGATTTCGCTTGTCTTTTGTTT---ACTCAT---ATT 26301 Query 22669 CATAAACTTCCATATGAAAC----TGTACTTGATATTATTACAAATGCAGTTGAACTTGA 22724 | ||||| || || ||| ||| |||||||| | | || || | |||| Sbjct 26300 CGTAAACAACC-TAGCCAACAACGTGTGAAGGATATTATAATGGAAGCTGTAGGCATTGA 26242 Query 22725 ACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAAT 22784 || ||| | ||| || ||||| || | |||||||| ||| | | || Sbjct 26241 ACAAGAATTCTTAACCGATGCATTACCTGTTGCATTGATTGGTATGAATTCTACTTTGAT 26182 Query 22785 GAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCA 22844 | || ||| ||| |||| ||||| |||||||| | || | || || | | || Sbjct 26181 GTGTCAATACATTGAATTCGTTGCTGATCGTCTTATGGTTGCTCTTGGGTTCGATAAAAT 26122 Query 22845 TTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAA 22904 ||||| | ||||| ||||| | ||||| | |||||||| ||||||||||||| Sbjct 26121 TTATATGGCAACGAATCCGTTTGACTTTATGGATATGATTTCACTGCAAGGAAAGACCAA 26062 Query 22905 TTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || ||||| | ||| ||| || ||| || ||||| ||| Sbjct 26061 CTTTTTTGAAAAGCGCGTTTCTGATTATCAACGTGCTGGTGTCATG 26016 >seq4556 Length=51470 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT-TCATTCGCGGA 22490 |||||| ||||||||||||||| | |||||||| || |||| || || || || Sbjct 10083 ATTAAGCGTAAGGCAGATTGGGCCTTCAAATGGATCT-CATCCAACGAATCCTTTGCTGA 10025 Query 22491 ACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAAT 22550 |||||| | || ||||| | || |||||||| ||||||||||| |||| | || Sbjct 10024 ACGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCTGGCTCATTCGCCTCCAT 9965 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 ||||||| |||| ||||||| | ||||| ||| | || ||| ||||| || || | Sbjct 9964 CTTTTGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACCTTTAGTAATGAATTGATCTG 9905 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 || ||||| |||||||| || || ||||| ||| Sbjct 9904 TCGTGATGAAGGTCTTCACACTGACTTTGCCTGT 9871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303277351370612