Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2614 98.7 8e-16 seq2600 98.7 8e-16 seq2841 86.0 5e-12 >seq2614 Length=127402 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| || || || |||||||| || | ||| ||||| Sbjct 59185 ATGCAGATTTTCGTCAAAACCCTTACTGGTAAAACCATCACTTTAGAAGTTGAGTCTTCT 59244 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | ||| | | ||||| ||||| ||| || || ||||| | || ||| || Sbjct 59245 GATAGTATTGAAAATGTAAAGCAAAAGATTCAAGACAAGGAAGGGATTCCTCCTGACCAA 59304 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||||||||||||| | ||| | | || || ||| Sbjct 59305 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGCCGTACCCTTTCAGACTACAAC 59364 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||| || ||| | || |||| Sbjct 59365 ATTCAAAAAGAATCCACTCTTCACTTGGT 59393 >seq2600 Length=207564 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || || || || ||||| || || | ||| || || Sbjct 124068 ATGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 124127 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | | | | ||||| ||||| ||| ||||| ||||| | || |||||| Sbjct 124128 GATAGTATCGATAACGTAAAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 124187 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || || | ||| ||||||||||||||||||| || | || ||||| Sbjct 124188 CAACGTCTCATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACTCTCAGTGACTATAAT 124247 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || || ||| | ||| | ||| | ||||| ||||| || Sbjct 124248 ATTCAAAAGGAATCAACTCTTCATTTAGTGCTAAGATTACGAGGTGG 124294 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || || || || ||||| || || | ||| || || | Sbjct 124296 ATGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 124355 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| |||||| || |||||||| | || ||||| Sbjct 124356 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 124415 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||||||||| | ||| ||||||||| ||||||||| || | ||||||||| Sbjct 124416 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAGCGATTATAAT 124475 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 || ||||| || || || | ||| |||| || | || |||| ||||| Sbjct 124476 ATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGGAAA 124525 >seq2841 Length=27215 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || || || || || || || || | ||| || ||| | Sbjct 25658 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 25599 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| |||||| ||||||||||| |||| ||||| Sbjct 25598 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 25539 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| |||| ||| || |||||| | ||||| | || | ||||| || Sbjct 25538 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAAT 25479 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 || |||||||| || || | ||| |||| || | || |||| ||||| Sbjct 25478 ATACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGGAAA 25429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425320330403920