Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2389 370 1e-97 seq3946 165 1e-35 seq4556 129 7e-25 >seq2389 Length=30206 Score = 370 bits (410), Expect = 1e-97 Identities = 758/1120 (68%), Gaps = 10/1120 (1%) Strand=Plus/Plus Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 |||||||| || || |||| ||| |||| |||||||| || || |||| | | Sbjct 12398 ATTACAAAAGTGGGTAAAGCAATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGACTT 12457 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | ||||| | || || || ||||| |||||||| || ||||| || || ||||| ||| Sbjct 12458 GTATATTCGACAATTTCCGTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGCTGA 12517 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 || |||||| | ||||| |||||||| || || || |||||| |||| |||||| | || Sbjct 12518 TTGCTCTTTCTATTACAAGCATCCTTGTAGAGCATAAATGGATTACCGGTTTCAGTTTGT 12577 Query 62909 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT--TT 62966 | ||| | || || | ||| | | | ||||| ||| | | | | ||||| || Sbjct 12578 GCTTCCAAGATAGCATACCATAACTTTTGTGCCTTAATTGTC--TCTCTCGCTCTTCCTT 12635 Query 62967 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 | | ||| || | ||| | | ||||| || |||||||||| | || |||| Sbjct 12636 CGCGTTCATAGCTTTCATAAAGAGCCACAAACTCATCACCCCAAACATCTTGCAAACCAG 12695 Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63086 | ||||| ||||| | | ||||| ||||| | ||||| || |||| ||| |||| Sbjct 12696 GTGCTTCATTAGGACAAAAGAGAGACCAATCTCCACCGTCCTTGACACGTTGCATGAAGA 12755 Query 63087 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 |||| || | |||||| || ||| | ||| | || ||| ||| || || || | Sbjct 12756 GATCGGGTACCCAAAGGGCATAAAACAAATCACGGGCTCTGATTTCATCCTTACCAAAGT 12815 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 ||||| | | ||| | || | | ||||||| |||||| || || | || ||||| | Sbjct 12816 TCTTTCTTAAATCTAAAAAGGTAAAGATATCAGCATGCCATGGCTCGAGATACATGGCAA 12875 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 |||| || || ||||| || || ||||| | || | || |||||||| | || | Sbjct 12876 AGGCTCCTGGACGCTTGTTGCCGCCTTGATCGACATAACGTGCTGTGTTATTGAATACAC 12935 Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 |||||| |||| | ||| || || |||||| || || | |||||| |||| ||| Sbjct 12936 GCAACATGGGAAGCAAACCGTTCGAATAACCATTTGTACCGGCAATATAGGATCCATTGG 12995 Query 63327 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63386 ||||||||||| ||| ||||| || || ||||| |||| || ||| || || Sbjct 12996 CACGAATATTATGAATGTTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGA 13055 Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 63446 |||||| || ||||||||||| || || ||| ||| ||||| | || | || || Sbjct 13056 TTTTTAATGTTTCATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAG 13115 Query 63447 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACC 63506 ||||| || ||||| || || ||||| || || |||||| || |||||||| Sbjct 13116 AGGACATCTGAGGACGAGGTGTACCGGCATTGAACAAAGTAGGACTGGCATGAGTAAAGA 13175 Query 63507 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATT 63565 |||| || || | | ||||| ||||| || || | ||| ||||| || | || || Sbjct 13176 ATTTCTCGGACATCAAGTTGTAAGTCTCGATTGCAGCGTCAATATCTTCACCG-TGGATA 13234 Query 63566 CCTACTGCGACACGCAT--TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63623 || | ||||||||||| ||| |||| ||||| | || || ||||| || || | Sbjct 13235 CCAATGGCGACACGCATGATAAGATGT--TGAGGACGCTCGGCGGTCTTGCCGTCAATCT 13292 Query 63624 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63683 | | | |||||| ||| | ||| || || |||||| |||||||| || |||| | Sbjct 13293 TGAGTAGATAGGATCGTTCAAGAGTCTTGAATCCAAAAAAGTTGTATTTGAAATCTCTGT 13352 Query 63684 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATAC 63743 | |||||||| | ||||| || || | | | ||| || | ||| | Sbjct 13353 CATAAATAATGGCTGAGTTCAGACGTTCTGCGTTGTCCTGAACAACCTTATAGGTTGTTT 13412 Query 63744 TTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCA 63803 || || || || | || || | | || ||||| ||||||||| | | |||||| | Sbjct 13413 CGGATATCATGGGGGAGTGCTTGCTTGTCTTGGGATTCACATAGTTGTAGAGATCCTCAA 13472 Query 63804 TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT 63843 |||||| | ||||| || |||||||| ||||||| ||| Sbjct 13473 TCACTTGAGAAAATACCTTCTTTGTTTCCTTGTGTAAATT 13512 Score = 172 bits (190), Expect = 7e-38 Identities = 535/821 (65%), Gaps = 19/821 (2%) Strand=Plus/Plus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| | ||| ||||| ||||| || | || ||| || || || |||||||| Sbjct 11482 GTACGCAAATAATACATACCCGTCTTCAATCCCTTTTGCCAACCATAGAAGTGCATACTT 11541 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || || || | | | || || || ||| ||| |||| | |||||||||||| ||| Sbjct 11542 GTCAGCTTACCAAAGTTGGGTTCAGCAATAAAGATGTTCAAACTTTGACTTTGATCAATG 11601 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 |||| || | ||| || ||||| | | ||| || ||| | ||||||||||| ||| Sbjct 11602 TAGGCGCCACGGTCAGCGGCCATATCAACAATTGTACGTTGAGAAATTTCCCAAACAGTC 11661 Query 62060 TTATAAA-CTCGCTTAATATCTTCTGGAAG-GTTTGTA--TTCTGAATGGATCCACCATC 62115 || || | ||| || | | || |||| || ||| || |||| ||||||||||| Sbjct 11662 TTGTAGAGCTCT-TTGAGGTGTTGAGGAATTGTGGGTACATTTTGAACAGATCCACCATC 11720 Query 62116 TGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAG 62175 ||||| ||| | ||||||| ||||| ||||| | | || ||| | | ||| Sbjct 11721 GGCCATGATCATGTTCTTGACTTCATCGTTCCAGATACCCATATCAACCAAATCACGAAG 11780 Query 62176 GAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACT 62235 | || || || | |||| |||| || || | || | || || |||| || Sbjct 11781 TAACCAAGGGTTGACCATTTGATATTCACCCGAGAGCACACGACGGGTATAAAAGTTGGA 11840 Query 62236 GGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 62295 || || || || | ||||||| ||||| ||||||| || || || || ||||| Sbjct 11841 AGTGTAAGGCTCAAAGCACTCATTGAAACCCAACATTTGAGAGGTGGAAGCGGTAGGCAT 11900 Query 62296 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGT 62353 ||| || | || | ||| | | || ||| | | || || || ||||| | Sbjct 11901 AGGGGCTAATAAGAGTGAATTGCGGACGCC--ATGCTTGGCTATCTTTTCCTTTAGTGAA 11958 Query 62354 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT- 62412 |||| | ||||||| | || || ||||| || || || Sbjct 11959 GCCCAGTCCCAAAGAGAGGTGGGAGTCACATTCCACATGTCGTATTGTAATATGCCCTTG 12018 Query 62413 ---ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACA 62469 || || ||| ||| |||| || || || ||||| | ||| ||||| | ||| || Sbjct 12019 GATACAGGACTAC---CCT-CATAAGTTTCATAAGGTCCGTACTTTTCAGCCAATTCGCA 12074 Query 62470 ACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGC 62529 || || || ||| ||| ||| |||||||| ||||| | |||||| | || || Sbjct 12075 TGAGGCTTCCAAGGCAGCGTGATAGATGGTTTCAAAGATTTGAATATTTAATTGTTTGGC 12134 Query 62530 TTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 62588 ||| ||| | ||||| || ||| |||| || || | ||| ||||||||||| |||| Sbjct 12135 TTC-AGGAGAGTCAAAGGGGTAACGTAAGGCCATGAATGTGTCGGCTAATCCTTGGACAC 12193 Query 62589 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 62648 | | ||||||||| | ||||||||| || || |||| ||||| | ||| ||||| | Sbjct 12194 CTAAACCGATAGGACGATGTCTCTTGTTTGATCTTTCTGCTTCAATGACAGGGTAATAGT 12253 Query 62649 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62689 | ||||| ||||| || || | ||||| ||| || ||| Sbjct 12254 TGATATCGATAATCTTGTTCAAGTTTCTAGTAATCACCTTG 12294 >seq3946 Length=52427 Score = 165 bits (182), Expect = 1e-35 Identities = 305/445 (69%), Gaps = 2/445 (0%) Strand=Plus/Plus Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 ||| || ||| || || ||||| ||||| || || || |||| | ||| || | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 32432 CATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 32491 ||| || || || ||||| || | |||||||||| | || || | || || | Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCATAAG 26150 Query 32492 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 32551 | ||| || || ||||| || ||| ||||| | ||||||| || || | | Sbjct 26151 ACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGC 26210 Query 32552 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 32611 ||| || | || | || | |||||||||||||| || || || |||||||| Sbjct 26211 AACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATATC 26270 Query 32612 TCTTACTGTTTCTTCACTCGGTGGAT-ACAATAAATGTTTAAACATCAAACATGCGAAAT 32670 | || || || || ||| | | || | | ||| |||||| | ||| ||||||| Sbjct 26271 CTTCACACGTTGTTGGCTAGGTTGTTTACGA-ATATGAGTAAACAAAAGACAAGCGAAAT 26329 Query 32671 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 32730 || || ||||| ||||| | || ||| ||||| || ||| || | |||||||| | Sbjct 26330 CGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCATCA 26389 Query 32731 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 32790 ||||| || ||||||||||| || || |||||||| || |||||||| || ||||||| Sbjct 26390 AACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTTCTA 26449 Query 32791 CTGCCGCAAAGGCAATAAGTCTCTC 32815 |||| ||||| |||| ||| | ||| Sbjct 26450 CTGCAGCAAAAGCAACAAGACGCTC 26474 Score = 145 bits (160), Expect = 1e-29 Identities = 228/324 (70%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 32881 ttGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 32940 |||| || |||||| || || | |||||| | | |||||| | ||| ||||||| Sbjct 26598 TTGTATCAATAGCAGAGAAAAGCATTTCTTTTTCTTCATCATCTTTTATATAGGTATCAA 26657 Query 32941 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 |||||||||| || |||| || ||||| |||||||| |||||||| || || || | Sbjct 26658 TCAAAAGACTGTATGTTTCTGAGTGAATATTTTCAATCATGATTTGAAAGCCATAAAAAC 26717 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTG--CTAAATTTTCATTCAC 33058 || |||| || | ||| | ||||| |||||| ||| || | ||||||||||| || Sbjct 26718 ATTTAGCTTCAGGAATTTTGACTTCATCACAAAA--GTTTTGCACCAAATTTTCATTTAC 26775 Query 33059 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 33118 || || ||| | ||||| || ||||| || | |||||| || || | Sbjct 26776 AATACCATCAGAGCTGGCAAAGAAAGCCAAAACGCGAGAAATAAAAAATCGCTCATTCTC 26835 Query 33119 TGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175 || | ||| || ||||||||| |||| || || ||| | |||||| ||||||| Sbjct 26836 AGTCATTTTGTTTTCCCAATCATTTTGATCTCTACTTAAATCTATTTCTTCAGCTGTCCA 26895 Query 33176 AAATGATGCCTCTGCCTTTTTATA 33199 ||| ||||| |||||||| ||||| Sbjct 26896 AAAAGATGCTTCTGCCTTCTTATA 26919 >seq4556 Length=51470 Score = 129 bits (142), Expect = 7e-25 Identities = 290/433 (67%), Gaps = 2/433 (0%) Strand=Plus/Plus Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 ||| || ||| ||||| ||||| ||||| || || || |||| | || || | || Sbjct 9583 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 9642 Query 32432 CATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 32491 ||| || |||||||| || ||| |||| ||||| || | ||||| | | || | Sbjct 9643 CATAAAGTCGAATGGGTTAGTAGCATTGTAAATCTTGTCGAATCCAAGAGCGACCATGAG 9702 Query 32492 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 32551 | ||| ||||| ||||| ||||| ||||| | ||||| || || | | Sbjct 9703 ACGATCAGCGACGAATTCGATATACTGACACATCAAGGTAGCGTTCATACCGATCAATGC 9762 Query 32552 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 32611 ||| || ||||| | | || ||||||||||| ||| ||| || ||| || || | Sbjct 9763 AACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACGGCTTCTACAATGAT-GT 9821 Query 32612 TCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 32670 ||| || || || ||| ||| | | | || | |||| | ||| || || | Sbjct 9822 CCTTGACGCGTTGTTGACTGGGTTGTTTACGGATGTGGGTGAACAAGAGACAGGCAAAGT 9881 Query 32671 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 32730 | ||| ||||| || || | || || ||||| || ||| || | |||||||| | Sbjct 9882 CAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGGCATCA 9941 Query 32731 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 32790 ||||| || || | |||||| ||||| || ||||| ||||||||||| || ||||| | Sbjct 9942 AACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCCTTCGA 10001 Query 32791 CTGCCGCAAAGGC 32803 | || |||||||| Sbjct 10002 CAGCGGCAAAGGC 10014 Score = 116 bits (128), Expect = 5e-21 Identities = 218/320 (68%), Gaps = 3/320 (1%) Strand=Plus/Plus Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 || || |||||| |||||| | ||||| | ||||||||| || ||||||||| Sbjct 10143 GTATCGATAGCAGAAAAGAGCATTTCCTTTTCTTGGTTATCTTTAATGTAGGTATCAATC 10202 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 || ||||| || |||| | ||||||||||||||| || || || || || || ||| Sbjct 10203 AAGAGACTGTAAGTTTCAGCATGAATGTTTTCAATCATGATCTGGAAACCATAAAAACAT 10262 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | || |||| ||||| ||||| |||||| || | | || || |||||||| || Sbjct 10263 TTGGCTTCGGGAATCTTGACTTCATCACAAAAGTTTTGTACCAAGTTCTCATTCACGATA 10322 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 || || | | ||||| || ||||| ||| | ||||| | ||||| | | Sbjct 10323 CCATCTGAGCCAGCAAAGAAGGCCAAGACACGAGAGATAAAGAAACGTTCGTTTTCAGAC 10382 Query 33123 AGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 | |||||| ||| |||| ||| || | || | ||||| | |||||||| Sbjct 10383 ATTTTATTTTCCCAGTCATGCTGATCCTTGCTCAAGTCAATCTCTTCTGCGGTCCAAAAG 10442 Query 33180 GATGCCTCTGCCTTTTTATA 33199 || || |||||||||||||| Sbjct 10443 GAAGCTTCTGCCTTTTTATA 10462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633595835453600