Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2600 170 2e-37 seq2614 140 3e-28 seq1352 140 3e-28 seq2841 138 1e-27 seq2553 125 6e-24 seq2577 102 7e-17 seq3464 89.7 4e-13 >seq2600 Length=207564 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || |||||| | ||||| | ||||| || || ||| Sbjct 124068 ATGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 124127 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || | |||||| | || | |||||||| || || || ||||| ||||| ||||| || Sbjct 124128 GATAGTATCGA-TAACGTAAAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCA 124186 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||||||||||||||||| ||| ||| | | || || || Sbjct 124187 ACAACGTCTCATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACTCTCAGTGACTATAA 124246 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| ||||| || || |||||||||||||| || |||| || Sbjct 124247 TATTCAAAAGGAATCAACTCTTCATTTAGTGCTAAGATTACGAGGTGG 124294 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| |||||| | || || ||| | |||||| | ||||| || || || Sbjct 124296 ATGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 124355 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || |||| ||||| ||||||||||| |||||||| || ||| Sbjct 124356 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 124415 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||| ||||| ||||||||| ||||||||| ||| || | ||||||| ||| Sbjct 124416 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAGCGATTATAAT 124475 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 || ||||| ||||| || || ||||| || || | ||||||| |||||| Sbjct 124476 ATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGGAAAT 124526 >seq2614 Length=127402 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || |||||| ||||||| | ||||| ||||| ||| Sbjct 59185 ATGCAGATTTTCGTCAAAACCCTTACTGGTAAAACCATCACTTTAGAAGTTGAGTCTTCT 59244 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | ||| || | |||||||| || ||||| ||||||||||| ||||||||| Sbjct 59245 GATAGTATTGAAAATGTAAAGCAAAAGATTCAAGACAAGGAAGGGATTCCTCCTGACCAA 59304 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || |||||||||||||||| || || | || ||||| Sbjct 59305 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGCCGTACCCTTTCAGACTACAAC 59364 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||||| || || || || || Sbjct 59365 ATTCAAAAAGAATCCACTCTTCACTTGGTCCT 59396 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| | || || || | ||||| | ||||| || || ||| Sbjct 58729 ATGCAAATCTTTGTAAAGACCCTTACAGGAAAGACTATCACTTTAGAAGTCGAATCTTCT 58788 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | ||||| | |||||||| ||| ||||| ||||| ||||| || |||||| Sbjct 58789 GATAGCATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 58848 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || |||||| | ||||||| ||| || | || ||||| Sbjct 58849 CAACGTCTCATTTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTTTCAGACTACAAC 58908 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| |||||||| || || || || || Sbjct 58909 ATTCAAAAGGAATCCACTCTCCACTTGGTTCT 58940 >seq1352 Length=65141 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || ||||| |||| || | ||||| ||||| ||| Sbjct 15294 ATGCAAATTTTCGTCAAGACTCTCACTGGTAAGACCATTACTTTGGAAGTCGAGTCTTCT 15235 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || ||| | |||||||| || || || || || ||||| ||||| ||| Sbjct 15234 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCAA 15175 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || |||||||| ||||| | ||| ||| || | || |||||| Sbjct 15174 CAGCGTTTGATCTTTGCTGGTAAACAATTGGAAGACGGTCGTACTTTGAGTGACTACAAT 15115 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| |||||||| || || || || || Sbjct 15114 ATTCAAAAGGAATCCACCCTTCACTTGGTTCT 15083 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| ||||||| | ||||| ||||| ||| Sbjct 15750 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCT 15691 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || ||| | |||||||| || || || || || ||||| ||||| || Sbjct 15690 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAG 15631 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || |||||||| ||||| | ||||||| || | || ||||| Sbjct 15630 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAAC 15571 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||||||| || || || || || Sbjct 15570 ATCCAAAAGGAATCCACTCTCCACTTGGTTCT 15539 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| ||||||| | ||||| ||||| ||| Sbjct 16206 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCT 16147 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || ||| | |||||||| || || || || || ||||| ||||| || Sbjct 16146 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAG 16087 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || |||||||| ||||| | ||||||| || | || ||||| Sbjct 16086 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAAC 16027 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||||||| || || || || || Sbjct 16026 ATCCAAAAGGAATCCACTCTCCACTTGGTTCT 15995 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| |||||| ||||||| | ||||| ||||| ||| Sbjct 15522 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15463 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | ||| ||| | |||||||| || ||||| || || ||||| ||||| ||| Sbjct 15462 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15403 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | ||||||| ||||| | || || || Sbjct 15402 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15343 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || || || || || Sbjct 15342 ATTCAAAAGGAATCTACTCTCCACTTGGTTCT 15311 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| |||||| ||||||| | ||||| ||||| ||| Sbjct 15978 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15919 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | ||| ||| | |||||||| || ||||| || || ||||| ||||| ||| Sbjct 15918 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15859 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | ||||||| ||||| | || || || Sbjct 15858 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15799 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || || || || || Sbjct 15798 ATTCAAAAGGAATCTACTCTCCACTTGGTTCT 15767 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || | || || || ||||||| | || || || || || Sbjct 16435 AATGCAAATCTTTGTTAAAACACTTACTGGCAAGACCATCACTTTGGAGGTCGAATCCTC 16376 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | ||||| | |||||||||||| ||||| ||||| || || ||||| || Sbjct 16375 TGATAGCATCGAAAACGTCAAGCAAAAAATCCAAGACAAGGAAGGTATCCCTCCTGATCA 16316 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || | ||||||| ||||| | || ||||| Sbjct 16315 ACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTACAA 16256 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || || || || || Sbjct 16255 CATTCAAAAGGAATCTACTCTCCACTTGGTTCT 16223 >seq2841 Length=27215 Score = 138 bits (152), Expect = 1e-27 Identities = 174/233 (75%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || | |||||| | ||||| || || || Sbjct 25658 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 25599 Query 25059 GACACTATCGAGTCAC-TGAA--GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||||| ||| || |||||||| || ||||| || Sbjct 25598 GATACCATTGA-TAACGTGAAAAGCAAAAT-TCAA-GATAAAGAAGGTATCCCACCCGAT 25542 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||| | ||||| | ||| || | | |||||| Sbjct 25541 CAACAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTAC 25482 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 ||||| ||||||||||| ||||| ||||| || || | ||||||| ||||| Sbjct 25481 AATATACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGGAAA 25429 Score = 123 bits (136), Expect = 2e-23 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || | |||||| | ||||| || || || Sbjct 25892 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 25833 Query 25059 GACACTATCGAGTCAC-TGAA--GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||||| ||| || |||||||| || ||||| || Sbjct 25832 GATACCATTGA-TAACGTGAAAAGCAAAAT-TCAA-GATAAAGAAGGTATCCCACCCGAT 25776 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||| | ||||| | ||| || | | |||||| Sbjct 25775 CAACAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTAC 25716 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGA 25220 ||||| ||||||||||| ||||| || || || || | ||||| Sbjct 25715 AATATACAAAAAGAATCAACGCTTCAATTGGTATTACGTTTAAGA 25671 Score = 123 bits (136), Expect = 2e-23 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || | |||||| | ||||| || || || Sbjct 26126 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 26067 Query 25059 GACACTATCGAGTCAC-TGAA--GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||||| ||| || |||||||| || ||||| || Sbjct 26066 GATACCATTGA-TAACGTGAAAAGCAAAAT-TCAA-GATAAAGAAGGTATCCCACCCGAT 26010 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||| | ||||| | ||| || | | |||||| Sbjct 26009 CAACAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTAC 25950 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGA 25220 ||||| ||||||||||| ||||| || || || || | ||||| Sbjct 25949 AATATACAAAAAGAATCAACGCTTCAATTGGTATTACGTTTAAGA 25905 >seq2553 Length=14598 Score = 125 bits (138), Expect = 6e-24 Identities = 123/157 (78%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||| || || || || |||||||| || ||||| ||||| ||||| |||| Sbjct 8052 TCTGACACCATTGA--CAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTG 8109 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || | ||||| ||||| |||||||||||||| | ||| ||| || |||| | Sbjct 8110 ACCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTGAGCGACT 8169 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| |||||||| |||||||| || || || || || Sbjct 8170 ACAACATTCAAAAGGAATCCACCCTTCACTTGGTTCT 8206 >seq2577 Length=30737 Score = 102 bits (112), Expect = 7e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| ||||||||||| || |||| ||||| || || ||||| ||||||| ||| Sbjct 19899 AGGTATTCCTCCTGACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCG 19840 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || |||| ||||| |||||||| |||||||| || || || || || Sbjct 19839 TACTTTGAGCGACTACAACATTCAAAAGGAATCCACTCTTCACTTGGTTCT 19789 >seq3464 Length=64949 Score = 89.7 bits (98), Expect = 4e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| || || ||||||||||| || |||| ||||| || || ||||| ||||||| ||| Sbjct 37915 AGGTATCCCCCCTGACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCG 37856 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||| || |||| ||||| |||||||| ||||| || || || Sbjct 37855 TACTTTGAGCGACTACAACATTCAAAAGGAATCTACTCTTCA 37814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433303886109290