Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3946 95.1 1e-14 >seq3946 Length=52427 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/284 (69%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| ||| || ||||| || || ||| || |||| || || | ||| || || Sbjct 26638 ATCTTTTATATAGGTATCAATCAAAAGACTGTATGTTTCTGAGTGAATATTTTCAATCAT 26697 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||| || || || |||||| ||||||| | || | ||||| | | |||| | | Sbjct 26698 GATTTGAAAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAGTTTTG 26757 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTG-CaaaaaaaGCCAATATATGCTTTA 93533 || | ||||||||| || |||||||| || |||| |||| |||||||| | | | Sbjct 26758 CACCAAATTTTCATTTACAATACCATCAGA-GCTGGCAAAGAAAGCCAAAACGCGAGAAA 26816 Query 93534 TAAAATGTTTCTCAT---CA-TCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589 ||||| | ||||| || || || | || |||||||| | ||||| | | | Sbjct 26817 TAAAAAATCGCTCATTCTCAGTCATTTTGTTT-TCCCAATCATTTTGATCTCTACTTAAA 26875 Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 || | |||||| | |||||||| ||||||||||| || || || Sbjct 26876 TCTATTTCTTCAGCTGTCCAAAAAGATGCTTCTGCCTTCTTATA 26919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556829017169840