Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq2600 129 5e-25 seq2841 102 7e-17 >seq2600 Length=207564 Score = 129 bits (142), Expect = 5e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || |||||||| || || | ||| ||| | | Sbjct 124296 ATGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 124355 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| ||||||||||| |||| |||||| Sbjct 124356 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 124415 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 ||||| ||||| | ||| ||||||||| | |||||| || | | || | |||||||| Sbjct 124416 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAG--CGATTATA 124473 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATA 111418 |||||||||| ||||| ||||| ||||| || || ||| | | ||||| |||| Sbjct 124474 ATATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGGAAATA 124527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||||||||| || | || || ||||| || || | ||| ||| | Sbjct 124068 ATGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 124127 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | ||||| ||||| ||| || || ||||| |||| |||||| Sbjct 124128 GATAGTATCGATAACGTAAAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 124187 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | ||| ||||||||||| |||||| | ||| | || |||||| Sbjct 124188 CAACGTCTCATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACTCTCAGTGACTATAAT 124247 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTG 111396 || ||||| ||||| || || ||||||||| Sbjct 124248 ATTCAAAAGGAATCAACTCTTCATTTAGTG 124277 >seq2841 Length=27215 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || ||||| || || || | ||| ||| || | Sbjct 25658 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 25599 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| || |||||||| | || ||||||| Sbjct 25598 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 25539 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111364 ||||| || |||| ||| || |||||| | ||||| || | | || | ||||| | Sbjct 25538 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAG--TGATTACA 25481 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAA 111416 |||||||||||||||| || || ||||| || || ||| | | ||||| || Sbjct 25480 ATATACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGGAAA 25429 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || ||||| || || || | ||| ||| || | Sbjct 25892 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 25833 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| || |||||||| | || ||||||| Sbjct 25832 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 25773 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111364 ||||| || |||| ||| || |||||| | ||||| || | | || | ||||| | Sbjct 25772 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAG--TGATTACA 25715 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGT 111402 |||||||||||||||| || || || || || || ||| Sbjct 25714 ATATACAAAAAGAATCAACGCTTCAATTGGTATTACGT 25677 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || ||||| || || || | ||| ||| || | Sbjct 26126 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 26067 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| || |||||||| | || ||||||| Sbjct 26066 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 26007 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111364 ||||| || |||| ||| || |||||| | ||||| || | | || | ||||| | Sbjct 26006 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAG--TGATTACA 25949 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGT 111402 |||||||||||||||| || || || || || || ||| Sbjct 25948 ATATACAAAAAGAATCAACGCTTCAATTGGTATTACGT 25911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423016458617200