Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq2600 122 6e-23 seq2841 91.5 1e-13 seq1352 82.4 5e-11 >seq2600 Length=207564 Score = 122 bits (134), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || | || |||||||| || || | ||| ||| | | Sbjct 124296 ATGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 124355 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || ||||| ||| | || | | ||| Sbjct 124356 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 124415 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 || ||||||||||||||||||||||||||||||||| | | | || | |||||| | Sbjct 124416 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAG--CGATTATA 124473 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT 22064 |||| || |||||||| || || ||| |||||||||||||| |||| ||| || Sbjct 124474 ATATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGGAAAT 124526 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 21912 AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCT 21971 |||||||| ||| ||||| || ||| | ||| | ||||| | || ||||||||| Sbjct 124146 AAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAACAACGTCTCATCTTTGCT 124205 Query 21972 GGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 22031 ||||||||| |||||||| ||| | || || |||||||| |||||||| ||| Sbjct 124206 GGCAAACAATTAGAAGATGGTCGTACTCTCAGTGACTATAATATTCAAAAGGAATCAACT 124265 Query 22032 CTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| | || || | |||||||| || Sbjct 124266 CTTCATTTAGTGCTAAGATTACGAGGTGG 124294 >seq2841 Length=27215 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| |||||||| ||| | || | ||||| ||||| || |||||||| ||| Sbjct 25574 AAAATTCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTAATTTTTGCTGGTAAA 25515 Query 21978 CAACTAGAAGAT--TTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 22035 ||||| ||||| | | | || | ||||||||||| || || ||||| || |||| Sbjct 25514 CAACTTGAAGAGGGTCGTACATTAAGT--GATTACAATATACAAAAAGAATCAACGCTTC 25457 Query 22036 ATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||||||||| |||| ||| Sbjct 25456 ATTTGGTATTACGTTTAAGAGGTGGA 25431 >seq1352 Length=65141 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| ||| |||||||| | || ||||| ||||| || |||| ||| || Sbjct 16437 AAAATGCAAATCTTTGTTAAAACACTTACTGGCAAGACCATCACTTTGGAGGTCGAATCC 16378 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || | | | | | ||||||||||| || || || ||| | ||| | Sbjct 16377 TCTGATAGCATCGAAAACGTCAAGCAAAAAATCCAAGACAAGGAAGGTATCCCTCCTGAT 16318 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | | ||||||||||| || || || |||||| || | | || ||| Sbjct 16317 CAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTAC 16258 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| |||||||||||||| || |||| | ||| | || || || Sbjct 16257 AACATTCAAAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 16208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358104871026364