Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4556 150 3e-31 seq2389 86.0 1e-11 >seq4556 Length=51470 Score = 150 bits (166), Expect = 3e-31 Identities = 340/505 (67%), Gaps = 16/505 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTC--CCGACGCAA 42690 ||||| || ||| ||||| || ||||| |||| |||||| || || ||| | Sbjct 10089 CCCTGTATTAAGCGTAAGGCAGATTGGGCCTTCAAATGGATC-----TCATCCAACGAAT 10035 Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | || | || | ||||| |||||| |||| ||||| ||||||||||| || ||| | | Sbjct 10034 CCTTTGCTGAACGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCTGGCTCAT 9975 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG--TCGATGCCCGGACTCACCTTCTCGAA 42808 ||||||||||||| ||| | ||| | | ||| | ||||||||| | ||||| || Sbjct 9974 TCGCCTCCATCTTTTGGTTAAAGAA--ACGTGGTTTGATGCCCGGTTTGACCTTTAGTAA 9917 Query 42809 CGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAG 42868 ||| | ||| | | || || || || || | ||||||||||| ||| ||||| | Sbjct 9916 TGAATTGATCTGTCGTGATGAAGGTCTTCACACTGACTTTGCCTGTCTCTTGTTC---AC 9860 Query 42869 CCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 |||| || | | | ||| | | || ||| || |||||| || ||||| | Sbjct 9859 CCACATCCGTAAACAACCCAGTCAACAACGCGTCAAGGACATCATTGTAGAAGCCGTCGG 9800 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988 ||||| | || ||||| || | | ||||| || | || |||| ||||| | | | Sbjct 9799 TATCGAACAAGAATTCCTGTCGGATGCTCTGCCTGTTGCATTGATCGGTATGAA-CGCTA 9741 Query 42989 CC-TCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCA 43047 || | ||||| |||| ||| | | |||||| || | |||| || | | || || Sbjct 9740 CCTTGATGTGTCAGTATATCGAATTCGTCGCTGATCGTCTCATGGTCGCTCTTGGATTCG 9681 Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107 | | ||||| | | ||| |||||||||||||| | ||||| | | |||| Sbjct 9680 ACAAGATTTACAATGCTACTAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGCA 9621 Query 43108 AGACCAACTTTTTCGAGAAGCGCGT 43132 ||||||||||||| || ||||| || Sbjct 9620 AGACCAACTTTTTTGAAAAGCGTGT 9596 >seq2389 Length=30206 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 || || | |||| ||| || || ||||||||||| | ||||||||||| ||||| | | Sbjct 12707 GGACAAAAGAGAGACCAATCTCCACCGTCCTTGACACGTTGCATGAAGAGATCGGGTACC 12766 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCA 245087 || ||||| | || | || | || ||||| || ||| ||| |||||| || | Sbjct 12767 CAAAGGGCATAAAACAAATCACGGG--CTCTGATTTCATCCTTACCAAAGTTCTTTCTTA 12824 Query 245088 GCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGG 245147 || |||||| ||||| || | ||||| ||||| | || | || | ||| || | Sbjct 12825 AATCTAAAAAGGTAAAGATATCAGCATGCCATGGCTCGAGATACATGGCAAAGGCTCCTG 12884 Query 245148 GCCGCTTGTTGCCTCCCTGGTCCAC 245172 | ||||||||||| || || || || Sbjct 12885 GACGCTTGTTGCCGCCTTGATCGAC 12909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944285301840160